ENSG00000113163


Homo sapiens

Features
Gene ID: ENSG00000113163
  
Biological name :COL4A3BP
  
Synonyms : COL4A3BP / collagen type IV alpha 3 binding protein / Q9Y5P4
  
Possible biological names infered from orthology :
  
Species: Homo sapiens
  
Chr. number: 5
Strand: -1
Band: q13.3
Gene start: 75356345
Gene end: 75512138
  
Corresponding Affymetrix probe sets: 219625_s_at (Human Genome U133 Plus 2.0 Array)   223465_at (Human Genome U133 Plus 2.0 Array)   223466_x_at (Human Genome U133 Plus 2.0 Array)   226277_at (Human Genome U133 Plus 2.0 Array)   
  
Cross references: Ensembl peptide - ENSP00000493565
Ensembl peptide - ENSP00000494424
Ensembl peptide - ENSP00000494760
Ensembl peptide - ENSP00000494804
Ensembl peptide - ENSP00000494810
Ensembl peptide - ENSP00000494968
Ensembl peptide - ENSP00000494969
Ensembl peptide - ENSP00000495038
Ensembl peptide - ENSP00000495172
Ensembl peptide - ENSP00000495430
Ensembl peptide - ENSP00000495446
Ensembl peptide - ENSP00000495760
Ensembl peptide - ENSP00000495798
Ensembl peptide - ENSP00000496016
Ensembl peptide - ENSP00000496243
Ensembl peptide - ENSP00000496462
Ensembl peptide - ENSP00000496472
Ensembl peptide - ENSP00000261415
Ensembl peptide - ENSP00000350046
Ensembl peptide - ENSP00000369862
Ensembl peptide - ENSP00000383996
Ensembl peptide - ENSP00000424244
Ensembl peptide - ENSP00000493563
Ensembl peptide - ENSP00000493604
Ensembl peptide - ENSP00000494073
Ensembl peptide - ENSP00000494110
NCBI entrez gene - 10087     See in Manteia.
OMIM - 604677
RefSeq - XM_011543091
RefSeq - XM_017008919
RefSeq - NM_001130105
RefSeq - NM_005713
RefSeq - NM_031361
RefSeq - XM_006714513
RefSeq - XM_011543090
RefSeq Peptide - NP_112729
RefSeq Peptide - NP_005704
RefSeq Peptide - NP_001123577
swissprot - A0A0A0MRE4
swissprot - Q9Y5P4
swissprot - A0A024RAJ5
swissprot - H0Y9J1
Ensembl - ENSG00000113163
  
Related genetic diseases (OMIM): 616351 - Mental retardation, autosomal dominant 34, 616351
See expression report in BioGPS
See gene description in Wikigenes
See gene description in GeneCards
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 col4a3bpaENSDARG00000024325Danio rerio
 COL4A3BPENSGALG00000014952Gallus gallus
 Q9EQG9ENSMUSG00000021669Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
Q96JA3 / PLEKHA8 / pleckstrin homology domain containing A8ENSG0000010608613
Q9HB20 / PLEKHA3 / pleckstrin homology domain containing A3ENSG0000011609511


Protein motifs (from Interpro)
Interpro ID Name
 IPR001849  Pleckstrin homology domain
 IPR002913  START domain
 IPR011993  PH-like domain superfamily
 IPR023393  START-like domain superfamily


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0000902 cell morphogenesis IMP
 biological_processGO:0001701 in utero embryonic development IMP
 biological_processGO:0003007 heart morphogenesis IMP
 biological_processGO:0006672 ceramide metabolic process IMP
 biological_processGO:0006869 lipid transport IEA
 biological_processGO:0006936 muscle contraction IMP
 biological_processGO:0006955 immune response NAS
 biological_processGO:0007029 endoplasmic reticulum organization IMP
 biological_processGO:0007165 signal transduction IMP
 biological_processGO:0008283 cell proliferation IMP
 biological_processGO:0016310 phosphorylation IEA
 biological_processGO:0030148 sphingolipid biosynthetic process TAS
 biological_processGO:0034976 response to endoplasmic reticulum stress IMP
 biological_processGO:0035621 ER to Golgi ceramide transport IMP
 biological_processGO:0055088 lipid homeostasis IMP
 biological_processGO:0070584 mitochondrion morphogenesis IMP
 biological_processGO:0120012 intermembrane sphingolipid transfer IDA
 cellular_componentGO:0005581 collagen trimer IEA
 cellular_componentGO:0005654 nucleoplasm IDA
 cellular_componentGO:0005737 cytoplasm IEA
 cellular_componentGO:0005739 mitochondrion IDA
 cellular_componentGO:0005783 endoplasmic reticulum IEA
 cellular_componentGO:0005789 endoplasmic reticulum membrane TAS
 cellular_componentGO:0005794 Golgi apparatus IDA
 cellular_componentGO:0005829 cytosol TAS
 cellular_componentGO:0048471 perinuclear region of cytoplasm IDA
 molecular_functionGO:0005515 protein binding IPI
 molecular_functionGO:0008289 lipid binding IEA
 molecular_functionGO:0016301 kinase activity IDA
 molecular_functionGO:0097001 ceramide binding IDA
 molecular_functionGO:0120017 intermembrane ceramide transfer activity IDA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 HP:0000006 Autosomal dominant inheritance "A mode of inheritance that is observed for traits related to a gene encoded on one of the autosomes (i.e., the human chromosomes 1-22) in which a trait manifests in heterozygotes. In the context of medical genetics, an autosomal dominant disorder is caused when a single copy of the mutant allele is present. Males and females are affected equally, and can both transmit the disorder with a risk of 50% for each child of inheriting the mutant allele." [HPO:curators]
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 HP:0000286 Epicanthus "An epicanthal fold is a semilunar fold of skin that extends from the upper eyelid across the medial canthal area to the lower eyelid." [HPO:curators]
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 HP:0000319 Flat philtrum 
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 HP:0000365 Hearing loss 
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 HP:0000463 Nares, anteverted "Anteriorly-facing nostrils viewed with the head in the Frankfurt horizontal and the eyes of the observer level with the eyes of the subject." [pmid:19152422]
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 HP:0000582 Upslanting palpebral fissures 
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 HP:0000664 Synophrys "Fusion of the left and right `eyebrow` (FMA:54237)." [HPO:probinson]
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 HP:0000687 Widely spaced teeth 
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 HP:0000733 Stereotyped, repetitive behaviour 
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 HP:0001249 Mental retardation 
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 HP:0001263 Developmental retardation "A delay in the achievement of motor or mental milestones manifested prior to age 18 and generally associated with lifelong mental and/or physical impairments." [HPO:curators]
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 HP:0001488 Bilateral ptosis 
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 HP:0001562 Oligohydramnios 
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 HP:0001773 Short, broad feet "Abnormally short and wide feet." [HPO:curators]
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 HP:0002058 Myopathic facies "A facial appearance characteristic of myopathic conditions. The face appears expressionless with sunken cheeks, bilateral ptosis, and inability to elevate the corners of the mouth, due to muscle weakness." [HPO:curators]
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 HP:0002069 Generalized tonic-clonic seizures "Generalized tonic-clonic seizures are `generalized seizures` (HP:0002197) in which the patient suddenly loses conciousness, the eyes roll back, and the entire body musculature undergoes tonic contractions. In the clonic phase of the seizure, there are rhythmic contractions of the musculature alternating with relaxation of all muscle groups. Loss of sphincter control during the seizure is common. This form of seizure was formerly commonly called grand mal seizure." [HPO:curators]
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 HP:0002136 Broad-based gait "An abnormal gait pattern in which persons stand and walk with their feet spaced widely apart. This is often a component of cerebellar ataxia." [HPO:curators]
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 HP:0002208 Coarse hair 
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 HP:0002212 Curly hair 
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 HP:0002307 Drooling 
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 HP:0003763 Bruxism 
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 HP:0004691 2-3 toe syndactyly "`Syndactyly` (HP:0001159) with fusion of toes two and three." [HPO:sdoelken]
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 HP:0005484 Microcephaly, postnatal 
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 HP:0006610 Wide intermamillary distance 
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 HP:0008936 Muscular hypotonia of the trunk "Muscular hypotonia (abnormally low muscle tone) affecting the musculature of the trunk." [HPO:curators]
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 HP:0100704 Cortical visual impairment "A form of loss of vision caused by damage to the visual cortex rather than a defect in the eye." [HPO:probinson]
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Interacting proteins (from Reactome)
Interactor ID Name Interaction type
 ENSG00000115825 PRKD3 / O94806 / protein kinase D3  / reaction
 ENSG00000133275 P78368 / CSNK1G2 / casein kinase 1 gamma 2  / reaction
 ENSG00000163590 PPM1L / Q5SGD2 / protein phosphatase, Mg2+/Mn2+ dependent 1L  / reaction / complex
 ENSG00000124164 VAPB / O95292 / VAMP associated protein B and C  / complex / reaction
 ENSG00000101558 VAPA / Q9P0L0 / VAMP associated protein A  / reaction / complex
 ENSG00000105287 PRKD2 / Q9BZL6 / protein kinase D2  / reaction
 ENSG00000184304 PRKD1 / Q15139 / protein kinase D1  / reaction






 

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