ENSG00000184304


Homo sapiens

Features
Gene ID: ENSG00000184304
  
Biological name :PRKD1
  
Synonyms : PRKD1 / protein kinase D1 / Q15139
  
Possible biological names infered from orthology :
  
Species: Homo sapiens
  
Chr. number: 14
Strand: -1
Band: q12
Gene start: 29576479
Gene end: 30191898
  
Corresponding Affymetrix probe sets: 205880_at (Human Genome U133 Plus 2.0 Array)   217705_at (Human Genome U133 Plus 2.0 Array)   
  
Cross references: Ensembl peptide - ENSP00000482645
Ensembl peptide - ENSP00000447333
Ensembl peptide - ENSP00000447723
Ensembl peptide - ENSP00000333568
Ensembl peptide - ENSP00000390535
Ensembl peptide - ENSP00000446866
NCBI entrez gene - 5587     See in Manteia.
OMIM - 605435
RefSeq - XM_017021462
RefSeq - NM_002742
RefSeq - XM_005267859
RefSeq - XM_011536964
RefSeq - XM_011536965
RefSeq - XM_017021461
RefSeq Peptide - NP_002733
RefSeq Peptide - NP_001316998
swissprot - F8WBA3
swissprot - H0YHS9
swissprot - F8VZ98
swissprot - H0YHL5
swissprot - Q15139
Ensembl - ENSG00000184304
  
Related genetic diseases (OMIM): 617364 - Congenital heart defects and ectodermal dysplasia, 617364
See expression report in BioGPS
See gene description in Wikigenes
See gene description in GeneCards
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 prkd1ENSDARG00000075949Danio rerio
 PRKD1ENSGALG00000009900Gallus gallus
 Prkd1ENSMUSG00000002688Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
PRKD3 / O94806 / protein kinase D3ENSG0000011582568
PRKD2 / Q9BZL6 / protein kinase D2ENSG0000010528766
LRRK1 / Q38SD2 / leucine rich repeat kinase 1ENSG0000015423720
LRRK2 / Q5S007 / leucine rich repeat kinase 2ENSG0000018890619


Protein motifs (from Interpro)
Interpro ID Name
 IPR000719  Protein kinase domain
 IPR001849  Pleckstrin homology domain
 IPR002219  Protein kinase C-like, phorbol ester/diacylglycerol-binding domain
 IPR008271  Serine/threonine-protein kinase, active site
 IPR011009  Protein kinase-like domain superfamily
 IPR011993  PH-like domain superfamily
 IPR015727  Protein kinase C mu-related
 IPR017441  Protein kinase, ATP binding site
 IPR020454  Diacylglycerol/phorbol-ester binding


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0001525 angiogenesis IEA
 biological_processGO:0001938 positive regulation of endothelial cell proliferation IGI
 biological_processGO:0002376 immune system process IEA
 biological_processGO:0006468 protein phosphorylation IDA
 biological_processGO:0006915 apoptotic process IEA
 biological_processGO:0006954 inflammatory response IEA
 biological_processGO:0007030 Golgi organization IMP
 biological_processGO:0007165 signal transduction TAS
 biological_processGO:0007229 integrin-mediated signaling pathway TAS
 biological_processGO:0007265 Ras protein signal transduction IMP
 biological_processGO:0007399 nervous system development IEA
 biological_processGO:0008283 cell proliferation TAS
 biological_processGO:0010508 positive regulation of autophagy IMP
 biological_processGO:0010595 positive regulation of endothelial cell migration IMP
 biological_processGO:0010837 regulation of keratinocyte proliferation ISS
 biological_processGO:0010976 positive regulation of neuron projection development IMP
 biological_processGO:0016310 phosphorylation IEA
 biological_processGO:0018105 peptidyl-serine phosphorylation IDA
 biological_processGO:0018107 peptidyl-threonine phosphorylation IDA
 biological_processGO:0030148 sphingolipid biosynthetic process TAS
 biological_processGO:0030154 cell differentiation IEA
 biological_processGO:0031647 regulation of protein stability IMP
 biological_processGO:0032793 positive regulation of CREB transcription factor activity IGI
 biological_processGO:0033138 positive regulation of peptidyl-serine phosphorylation IGI
 biological_processGO:0034198 cellular response to amino acid starvation IMP
 biological_processGO:0034599 cellular response to oxidative stress IDA
 biological_processGO:0035556 intracellular signal transduction IMP
 biological_processGO:0035924 cellular response to vascular endothelial growth factor stimulus IMP
 biological_processGO:0038033 positive regulation of endothelial cell chemotaxis by VEGF-activated vascular endothelial growth factor receptor signaling pathway IMP
 biological_processGO:0042993 obsolete positive regulation of transcription factor import into nucleus IEA
 biological_processGO:0043123 positive regulation of I-kappaB kinase/NF-kappaB signaling IMP
 biological_processGO:0043536 positive regulation of blood vessel endothelial cell migration IMP
 biological_processGO:0043552 positive regulation of phosphatidylinositol 3-kinase activity IC
 biological_processGO:0045087 innate immune response IEA
 biological_processGO:0045669 positive regulation of osteoblast differentiation ISS
 biological_processGO:0045766 positive regulation of angiogenesis IMP
 biological_processGO:0045806 negative regulation of endocytosis TAS
 biological_processGO:0045944 positive regulation of transcription by RNA polymerase II IMP
 biological_processGO:0046777 protein autophosphorylation TAS
 biological_processGO:0048010 vascular endothelial growth factor receptor signaling pathway IMP
 biological_processGO:0048193 Golgi vesicle transport ISS
 biological_processGO:0050829 defense response to Gram-negative bacterium IEA
 biological_processGO:0051092 positive regulation of NF-kappaB transcription factor activity IMP
 biological_processGO:0051279 regulation of release of sequestered calcium ion into cytosol IEA
 biological_processGO:0060548 negative regulation of cell death IMP
 biological_processGO:0071447 cellular response to hydroperoxide IMP
 biological_processGO:0089700 protein kinase D signaling IGI
 biological_processGO:1901727 positive regulation of histone deacetylase activity IGI
 biological_processGO:2001028 positive regulation of endothelial cell chemotaxis IMP
 biological_processGO:2001044 regulation of integrin-mediated signaling pathway TAS
 cellular_componentGO:0000421 autophagosome membrane IDA
 cellular_componentGO:0005622 intracellular IEA
 cellular_componentGO:0005634 nucleus IEA
 cellular_componentGO:0005737 cytoplasm IEA
 cellular_componentGO:0005794 Golgi apparatus IDA
 cellular_componentGO:0005802 trans-Golgi network IDA
 cellular_componentGO:0005829 cytosol TAS
 cellular_componentGO:0005886 plasma membrane TAS
 cellular_componentGO:0005887 integral component of plasma membrane TAS
 cellular_componentGO:0005911 cell-cell junction IEA
 cellular_componentGO:0005938 cell cortex IEA
 cellular_componentGO:0016020 membrane IEA
 molecular_functionGO:0000166 nucleotide binding IEA
 molecular_functionGO:0004672 protein kinase activity IEA
 molecular_functionGO:0004674 protein serine/threonine kinase activity IDA
 molecular_functionGO:0004697 protein kinase C activity IDA
 molecular_functionGO:0005515 protein binding IPI
 molecular_functionGO:0005524 ATP binding IEA
 molecular_functionGO:0016301 kinase activity IEA
 molecular_functionGO:0016740 transferase activity IEA
 molecular_functionGO:0042802 identical protein binding IPI
 molecular_functionGO:0046872 metal ion binding IEA


Pathways (from Reactome)
Pathway description
Sphingolipid de novo biosynthesis


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 HP:0000006 Autosomal dominant inheritance "A mode of inheritance that is observed for traits related to a gene encoded on one of the autosomes (i.e., the human chromosomes 1-22) in which a trait manifests in heterozygotes. In the context of medical genetics, an autosomal dominant disorder is caused when a single copy of the mutant allele is present. Males and females are affected equally, and can both transmit the disorder with a risk of 50% for each child of inheriting the mutant allele." [HPO:curators]
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 HP:0000252 Microcephaly "Microcephaly is a neurodevelopmental disorder in which the circumference of the head is more than two standard deviations smaller than the age- and gender-dependent norm." [HPO:curators]
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 HP:0000426 Prominent nasal bridge 
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 HP:0000639 Nystagmus "Rhythmic, involuntary oscillations of one or both eyes related to abnormality in fixation, conjugate gaze, or vestibular mechanisms." [HPO:curators]
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 HP:0000687 Widely spaced teeth 
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 HP:0000691 Microdontia 
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 HP:0000750 Impaired language development 
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 HP:0000958 Dry skin 
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 HP:0000963 Thin skin 
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 HP:0001159 Syndactyly "Webbing or fusion of the fingers or toes, involving soft parts only or including bone structure. Bony fusions are revered to as "bony" Syndactyly if the fusion occurs in a radio-ulnar axis. Fusions of bones of the fingers or toes in a proximo-distal axis are refered to as "Symphalangism"." [HPO:curators]
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 HP:0001263 Developmental retardation "A delay in the achievement of motor or mental milestones manifested prior to age 18 and generally associated with lifelong mental and/or physical impairments." [HPO:curators]
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 HP:0001290 Generalized hypotonia "Generalized muscular hypotonia (abnormally low muscle tone)." [HPO:curators]
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 HP:0001808 Fragile nails 
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 HP:0002209 Sparse scalp hair "Sparseness of the `head hair` (FMA:54241)." [HPO:probinson]
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 HP:0002650 Scoliosis "The presence of an abnormal lateral curvature of the spine." [HPO:curators]
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 HP:0005280 Depressed nasal root and bridge 
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 HP:0006323 Premature deciduous tooth loss 
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 HP:0011220 Prominent forehead "Forward prominence of the entire forehead, due to protrusion of the frontal bone." [pmid:19125436]
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 HP:0011304 Broad thumb "Increased thumb width without increased dorso-ventral dimension." [pmid:19125433]
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 HP:0011968 Feeding difficulties "Impaired ability to eat related to problems gathering food and getting ready to suck, chew, or swallow it." [ISCA:eriggs]
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Interacting proteins (from Reactome)
Interactor ID Name Interaction type
 ENSG00000113163 Q9Y5P4 / COL4A3BP / collagen type IV alpha 3 binding protein  / reaction






 

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