ENSDARG00000025581


Danio rerio

Features
Gene ID: ENSDARG00000025581
  
Biological name :rpl10
  
Synonyms : Q7ZV96 / ribosomal protein L10 / rpl10
  
Possible biological names infered from orthology : 60S ribosomal protein L10-like / P27635 / P86048 / Q6ZWV3 / Q96L21 / ribosomal protein L10 like / ribosomal protein L10, pseudogene 3 / RPL10L / Rpl10-ps3
  
Species: Danio rerio
  
Chr. number: 23
Strand: -1
Band:
Gene start: 19712557
Gene end: 19715859
  
Corresponding Affymetrix probe sets: Dr.1329.1.S1_at (Zebrafish Array)   NM_200027_at (Zebrafish Genome Array with custom cdf files)   
  
Cross references: Ensembl peptide - ENSDARP00000119262
Ensembl peptide - ENSDARP00000120909
Ensembl peptide - ENSDARP00000036951
Ensembl peptide - ENSDARP00000118484
NCBI entrez gene - 336712     See in Manteia.
RefSeq - NM_200027
RefSeq - XM_017353523
RefSeq Peptide - NP_956321
swissprot - E9QIR9
swissprot - Q7ZV96
ZFIN ID - ZDB-GENE-030131-8656
Ensembl - ENSDARG00000025581
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 Q96L21ENSG00000165496Homo sapiens
 RPL10ENSG00000147403Homo sapiens
 P86048ENSMUSG00000060499Mus musculus
 Q6ZWV3ENSMUSG00000058443Mus musculus
 Rpl10ENSMUSG00000008682Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
No match


Protein motifs (from Interpro)
Interpro ID Name
 IPR001197  Ribosomal protein L10e
 IPR016180  Ribosomal protein L10e/L16
 IPR018255  Ribosomal protein L10e, conserved site


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0000027 ribosomal large subunit assembly IBA
 biological_processGO:0006412 translation IBA
 biological_processGO:0006417 regulation of translation IMP
 biological_processGO:0007275 multicellular organism development IEA
 biological_processGO:0007420 brain development IMP
 biological_processGO:1990403 embryonic brain development IMP
 cellular_componentGO:0005622 intracellular IEA
 cellular_componentGO:0005840 ribosome IEA
 cellular_componentGO:0022625 cytosolic large ribosomal subunit IBA
 molecular_functionGO:0003723 RNA binding IBA
 molecular_functionGO:0003735 structural constituent of ribosome IBA
 molecular_functionGO:0045182 translation regulator activity IMP


Pathways (from Reactome)
Pathway description
L13a-mediated translational silencing of Ceruloplasmin expression
SRP-dependent cotranslational protein targeting to membrane
Major pathway of rRNA processing in the nucleolus and cytosol
Formation of a pool of free 40S subunits
GTP hydrolysis and joining of the 60S ribosomal subunit
Nonsense Mediated Decay (NMD) independent of the Exon Junction Complex (EJC)
Nonsense Mediated Decay (NMD) enhanced by the Exon Junction Complex (EJC)


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 ZFA:0000029 hindbrain hindbrain apoptotic process increased process quality , abnormal
Show

 ZFA:0000109 forebrain forebrain apoptotic process increased process quality , abnormal
Show

 ZFA:0001114 head head decreased size , abnormal
head apoptotic process increased process quality , abnormal
head polysome decreased amount , abnormal
head cytosolic ribosome increased amount , abnormal
Show

  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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