ENSDARG00000025766


Danio rerio

Features
Gene ID: ENSDARG00000025766
  
Biological name :zgc:66440
  
Synonyms : zgc:66440
  
Possible biological names infered from orthology : deltex E3 ubiquitin ligase 3 / DTX3 / Probable E3 ubiquitin-protein ligase DTX3 / Q80V91 / Q8N9I9
  
Species: Danio rerio
  
Chr. number: 23
Strand: -1
Band:
Gene start: 27041111
Gene end: 27061072
  
Corresponding Affymetrix probe sets: Dr.25702.1.A1_at (Zebrafish Array)   NM_200528_at (Zebrafish Genome Array with custom cdf files)   
  
Cross references: Ensembl peptide - ENSDARP00000113198
Ensembl peptide - ENSDARP00000157663
Ensembl peptide - ENSDARP00000116069
Ensembl peptide - ENSDARP00000115738
Ensembl peptide - ENSDARP00000107053
Ensembl peptide - ENSDARP00000110688
NCBI entrez gene - 393500     See in Manteia.
RefSeq - NM_200528
RefSeq Peptide - NP_956822
swissprot - A0A0J9YIW6
swissprot - F1QUJ1
swissprot - F1R959
swissprot - Q4G0B5
swissprot - E9QJH6
swissprot - E9QGV9
ZFIN ID - ZDB-GENE-040426-1640
Ensembl - ENSDARG00000025766
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 DTX3ENSG00000178498Homo sapiens
 Dtx3ENSMUSG00000040415Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
si:dkey-40c23.2 / si:dkey-40c23.3ENSDARG0000010464932
si:dkey-40c23.2ENSDARG0000007550431
si:dkey-3h3.3ENSDARG0000006771829
DTX4 / si:ch211-119e14.2 / Q6PDK8* / Q9Y2E6* / deltex E3 ubiquitin ligase 4* / E3 ubiquitin-protein ligase DTX4 *ENSDARG0000007630226
dtx4 / deltex 4, E3 ubiquitin ligase / Q9Y2E6* / Q6PDK8* / deltex E3 ubiquitin ligase 4* / E3 ubiquitin-protein ligase DTX4 *ENSDARG0000007801626
dtx2 / deltex 2, E3 ubiquitin ligase / Q86UW9* / Q8R3P2* / deltex E3 ubiquitin ligase 2* / Probable E3 ubiquitin-protein ligase DTX2 *ENSDARG0000003293323
si:ch73-78o10.1ENSDARG0000008951114
si:dkey-40c23.1ENSDARG0000009759211


Protein motifs (from Interpro)
Interpro ID Name
 IPR001841  Zinc finger, RING-type
 IPR013083  Zinc finger, RING/FYVE/PHD-type
 IPR017907  Zinc finger, RING-type, conserved site


Gene Ontology (GO)
TypeGO IDTermEv.Code
No match


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

1 s.

 
External programs and data are copyrighted by and are the property of their respective authors.
The Manteia system, data and analyses are provided "as is" with no warranties, expressed or implied as to capabilities or accuracy. User assumes the entire risk as to the results and performance of the software, data and documentation


                   

© Olivier Tassy / Olivier Pourquie 2007-2024
contact: otassy@igbmc.fr