ENSDARG00000026806


Danio rerio

Features
Gene ID: ENSDARG00000026806
  
Biological name :taf8
  
Synonyms : Q6P0T2 / taf8 / TAF8 RNA polymerase II, TATA box binding protein (TBP)-associated factor
  
Possible biological names infered from orthology : Q7Z7C8 / Q9EQH4 / TATA-box binding protein associated factor 8 / Transcription initiation factor TFIID subunit 8
  
Species: Danio rerio
  
Chr. number: 23
Strand: 1
Band:
Gene start: 32392461
Gene end: 32423348
  
Corresponding Affymetrix probe sets: Dr.7833.1.S1_at (Zebrafish Array)   NM_200286_at (Zebrafish Genome Array with custom cdf files)   
  
Cross references: Ensembl peptide - ENSDARP00000130755
Ensembl peptide - ENSDARP00000133427
Ensembl peptide - ENSDARP00000131962
Ensembl peptide - ENSDARP00000032165
NCBI entrez gene - 393256     See in Manteia.
RefSeq - NM_200286
RefSeq Peptide - NP_956580
swissprot - A0A0R4II79
swissprot - A0A0R4I9Y0
swissprot - Q6P0T2
ZFIN ID - ZDB-GENE-040426-1013
Ensembl - ENSDARG00000026806
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 TAF8ENSGALG00000003498Gallus gallus
 TAF8ENSG00000137413Homo sapiens
 Taf8ENSMUSG00000023980Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
No match


Protein motifs (from Interpro)
Interpro ID Name
 IPR006565  Bromodomain associated domain
 IPR009072  Histone-fold
 IPR019473  Transcription factor TFIID, subunit 8, C-terminal


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0006351 transcription, DNA-templated IEA
 biological_processGO:0006355 regulation of transcription, DNA-templated IEA
 biological_processGO:0007275 multicellular organism development IEA
 biological_processGO:0030154 cell differentiation IEA
 cellular_componentGO:0005634 nucleus IEA
 cellular_componentGO:0005669 transcription factor TFIID complex IEA
 cellular_componentGO:0005737 cytoplasm IEA
 molecular_functionGO:0046982 protein heterodimerization activity IEA


Pathways (from Reactome)
Pathway description
RNA polymerase II transcribes snRNA genes


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 ZFA:0000054 pericardium pericardium edematous , abnormal
Show

 ZFA:0000107 eye eye decreased size , abnormal
Show

 ZFA:0000112 gut gut quality , abnormal
gut hypoplastic , abnormal
Show

 ZFA:0000123 liver liver quality , abnormal
liver hypoplastic , abnormal
Show

 ZFA:0001114 head head decreased size , abnormal
Show

 ZFA:0001439 anatomical system anatomical system quality , abnormal
Show

  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

0 s.

 
External programs and data are copyrighted by and are the property of their respective authors.
The Manteia system, data and analyses are provided "as is" with no warranties, expressed or implied as to capabilities or accuracy. User assumes the entire risk as to the results and performance of the software, data and documentation


                   

© Olivier Tassy / Olivier Pourquie 2007-2024
contact: otassy@igbmc.fr