ENSDARG00000027584


Danio rerio

Features
Gene ID: ENSDARG00000027584
  
Biological name :ttpa
  
Synonyms : tocopherol (alpha) transfer protein / ttpa
  
Possible biological names infered from orthology : alpha tocopherol transfer protein / P49638 / Q8BWP5
  
Species: Danio rerio
  
Chr. number: 2
Strand: 1
Band:
Gene start: 26647472
Gene end: 26653148
  
Corresponding Affymetrix probe sets: Dr.7163.1.A1_at (Zebrafish Array)   NM_199731_at (Zebrafish Genome Array with custom cdf files)   
  
Cross references: Ensembl peptide - ENSDARP00000117556
Ensembl peptide - ENSDARP00000138680
NCBI entrez gene - 325906     See in Manteia.
RefSeq - NM_199731
RefSeq Peptide - NP_956025
swissprot - B0S5J5
swissprot - A0A0R4ITM7
ZFIN ID - ZDB-GENE-030131-4631
Ensembl - ENSDARG00000027584
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 TTPAENSGALG00000030031Gallus gallus
 TTPAENSG00000137561Homo sapiens
 TtpaENSMUSG00000073988Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
ttpal / tocopherol (alpha) transfer protein-like / Q9BTX7* / Q9D3D0* / alpha tocopherol transfer protein like*ENSDARG0000007064433
rlbp1a / retinaldehyde binding protein 1a / RLBP1* / P12271* / retinaldehyde binding protein 1*ENSDARG0000001250426
clvs2 / Q5SPP0 / clavesin 2 / CLVS1* / Q8IUQ0* / clavesin 1*ENSDARG0000005312226
rlbp1b / retinaldehyde binding protein 1b / RLBP1* / P12271* / Q9Z275* / retinaldehyde binding protein 1*ENSDARG0000004580824


Protein motifs (from Interpro)
Interpro ID Name
 IPR001251  CRAL-TRIO lipid binding domain
 IPR011074  CRAL/TRIO, N-terminal domain


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0007417 central nervous system development IMP
 biological_processGO:0043009 chordate embryonic development IMP


Pathways (from Reactome)
Pathway description
Vitamin E


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 ZFA:0000737 cranium cranium malformed , abnormal
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 ZFA:0001094 whole organism whole organism dead , abnormal
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 ZFA:0001117 post-vent region post-vent region malformed , abnormal
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 ZFA:0001678 immature eye immature eye morphology , abnormal
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Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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contact: otassy@igbmc.fr