ENSDARG00000028475


Danio rerio

Features
Gene ID: ENSDARG00000028475
  
Biological name :lin9
  
Synonyms : lin9 / lin-9 DREAM MuvB core complex component / Q5RHQ8
  
Possible biological names infered from orthology : Q5TKA1
  
Species: Danio rerio
  
Chr. number: 20
Strand: 1
Band:
Gene start: 43691208
Gene end: 43715242
  
Corresponding Affymetrix probe sets: Dr.2058.1.A1_at (Zebrafish Array)   
  
Cross references: Ensembl peptide - ENSDARP00000045184
Ensembl peptide - ENSDARP00000127210
NCBI entrez gene - 560867     See in Manteia.
swissprot - Q08BJ0
swissprot - Q5RHQ8
ZFIN ID - ZDB-GENE-030131-1747
Ensembl - ENSDARG00000028475
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 LIN9ENSGALG00000009233Gallus gallus
 LIN9ENSG00000183814Homo sapiens
 Lin9ENSMUSG00000058729Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
No match


Protein motifs (from Interpro)
Interpro ID Name
 IPR010561  Protein LIN-9/Protein ALWAYS EARLY
 IPR033471  DIRP domain


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0006351 transcription, DNA-templated IEA
 biological_processGO:0007049 cell cycle IEA
 biological_processGO:0051726 regulation of cell cycle IMP
 cellular_componentGO:0005634 nucleus IEA
 cellular_componentGO:0017053 transcriptional repressor complex IEA


Pathways (from Reactome)
Pathway description
G0 and Early G1


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 ZFA:0000008 brain brain apoptotic , abnormal
brain nucleus apoptotic , abnormal
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 ZFA:0000054 pericardium pericardium edematous , abnormal
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 ZFA:0000107 eye eye decreased size , abnormal
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 ZFA:0001114 head head decreased size , abnormal
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 ZFA:0001115 trunk trunk curved dorsal , abnormal
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 ZFA:0001149 olfactory system olfactory system apoptotic , abnormal
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Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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contact: otassy@igbmc.fr