ENSMUSG00000058729


Mus musculus

Features
Gene ID: ENSMUSG00000058729
  
Biological name :Lin9
  
Synonyms : Lin9 / lin-9 DREAM MuvB core complex component
  
Possible biological names infered from orthology : Q5TKA1
  
Species: Mus musculus
  
Chr. number: 1
Strand: 1
Band: H4
Gene start: 180641150
Gene end: 180690694
  
Corresponding Affymetrix probe sets: 10352267 (MoGene1.0st)   1428639_at (Mouse Genome 430 2.0 Array)   1443984_at (Mouse Genome 430 2.0 Array)   
  
Cross references: Ensembl peptide - ENSMUSP00000141331
Ensembl peptide - ENSMUSP00000142096
Ensembl peptide - ENSMUSP00000141530
Ensembl peptide - ENSMUSP00000141503
NCBI entrez gene - 72568     See in Manteia.
MGI - MGI:1919818
RefSeq - XM_006496988
RefSeq - NM_001103182
RefSeq - XM_006496987
RefSeq Peptide - NP_001096652
swissprot - A0A0A6YWF7
swissprot - A0A0A6YXQ9
swissprot - A0A0A6YWD3
swissprot - A0A0A6YVZ7
Ensembl - ENSMUSG00000058729
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 lin9ENSDARG00000028475Danio rerio
 LIN9ENSGALG00000009233Gallus gallus
 LIN9ENSG00000183814Homo sapiens


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
No match


Protein motifs (from Interpro)
Interpro ID Name
 IPR010561  Protein LIN-9/Protein ALWAYS EARLY
 IPR033471  DIRP domain


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0006351 transcription, DNA-templated IEA
 biological_processGO:0007049 cell cycle IEA
 cellular_componentGO:0005654 nucleoplasm IEA
 cellular_componentGO:0017053 transcriptional repressor complex IEA


Pathways (from Reactome)
Pathway description
G0 and Early G1


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 MP:0000496 abnormal small intestine morphology "structural or developmental anomalies of the intestinum tenue " [Stedman s Medical Dictionary:ISBN 0-683-40008-8]
Show

Allelic Composition: Gt(ROSA)26Sortm1(cre/ERT)Brn/Gt(ROSA)26Sor+,Lin9tm1.1Sgau/Lin9tm1.1Sgau
Genetic Background: involves: 129P2/OlaHsd * 129S6/SvEvTac * C57BL/6 * SJL

 MP:0001260 increased body weight "greater than normal average weight " [J:33400]
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Allelic Composition: Cdk4tm1Kiyo/Cdk4tm1Kiyo
Genetic Background: involves: 129S1/Sv

 MP:0001262 decreased body weight "lower than normal average weight " [J:61295]
Show

Allelic Composition: Slc26a4pdsm/Slc26a4pdsm
Genetic Background: BXA7/PgnJ-Slc26a4pdsm/J

 MP:0001672 abnormal embryogenesis/ development "anomaly in the establishment of the characteristic configuration of the embryonic body" [Stedman s Medical Dictionary:ISBN 0-683-40008-8]
Show

Allelic Composition: Ctcfltm1.1Vloc/Ctcfltm1.1Vloc
Genetic Background: involves: 129S1/Sv * C57BL/6 * SJL

 MP:0001925 male infertility "inability of male to produce live offspring" [Stedman s Medical Dictionary:ISBN 0-683-40008-8, J:60409]
Show

Allelic Composition: Cdk4tm1Kiyo/Cdk4tm1Kiyo,Lin9tm1Orc/Lin9tm1Orc
Genetic Background: involves: 129S1/Sv

 MP:0001926 female infertility "inability of female to produce live offspring" [Stedman s Medical Dictionary:ISBN 0-683-40008-8, J:34193]
Show

Allelic Composition: Cdk4tm1Kiyo/Cdk4tm1Kiyo,Lin9tm1Orc/Lin9tm1Orc
Genetic Background: involves: 129S1/Sv

 MP:0002083 premature death "death after 3 weeks of age, but before normal life span" [csmith:Cynthia L. Smith , Mouse Genome Informatics Curator]
Show

Allelic Composition: Gt(ROSA)26Sortm1(cre/ERT)Brn/Gt(ROSA)26Sor+,Lin9tm1.1Sgau/Lin9tm1.1Sgau
Genetic Background: involves: 129P2/OlaHsd * 129S6/SvEvTac * C57BL/6 * SJL

 MP:0003077 abnormal cell cycle "failure to progress or abnormal progression through the stages of of the cell cycle" [smb:Susan M. Bello, Mouse Genome Informatics Curator, J:91266]
Show

Allelic Composition: Cdk4tm1Kiyo/Cdk4tm1Kiyo,Lin9tm1Orc/Lin9tm1Orc
Genetic Background: involves: 129S1/Sv

Allelic Composition: Cdk4tm1Kiyo/Cdk4+,Lin9tm1Orc/Lin9+
Genetic Background: involves: 129S1/Sv

 MP:0003087 absent allantois "missing fetal membrane which contributes to the formation of the umbilical cord and placenta" [Stedman s Medical Dictionary, 27th edition:ISBN 0-683-40008-8]
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Allelic Composition: Ctcfltm1.1Vloc/Ctcfltm1.1Vloc
Genetic Background: involves: 129S1/Sv * C57BL/6 * SJL

 MP:0003111 abnormal nucleus morphology "abnormalities in the nucleus and/or its surrounding membrane" [J:91473, smb:Susan M. Bello, Mouse Genome Informatics Curator]
Show

Allelic Composition: Gt(ROSA)26Sortm1(cre/ERT)Brn/Gt(ROSA)26Sor+,Lin9tm1.1Sgau/Lin9tm1.1Sgau
Genetic Background: involves: 129P2/OlaHsd * 129S6/SvEvTac * C57BL/6 * SJL

 MP:0004046 abnormal mitosis "anomaly in the process of cell division including both division of the nucleus (karyokinesis) and the cytoplasm (cytokinesis) " [smb:Susan M Bello, Mouse Genome Informatics Curator]
Show

Allelic Composition: Gt(ROSA)26Sortm1(cre/ERT)Brn/Gt(ROSA)26Sor+,Lin9tm1.1Sgau/Lin9tm1.1Sgau
Genetic Background: involves: 129P2/OlaHsd * 129S6/SvEvTac * C57BL/6 * SJL

 MP:0004804 decreased susceptibility to autoimmune diabetes "reduced likelihood that an organism will develop inflammatory pancreatic disease resulting from the body attacking and destroying the insulin-producing beta islet cells of the pancreas" [MGI:csmith "Cynthia L. Smith, Mouse Genome Informatics Curator"]
Show

Allelic Composition: Cdk4tm1Kiyo/Cdk4+,Lin9tm1Orc/Lin9+
Genetic Background: involves: 129S1/Sv

 MP:0004965 inner cell mass degeneration 
Show

Allelic Composition: Ctcfltm1.1Vloc/Ctcfltm1.1Vloc
Genetic Background: involves: 129S1/Sv * C57BL/6 * SJL

 MP:0005030 absent amnion "missing innermost of the extraembryonic membranes" [dlb:Donna Burkart , Mouse Genome Informatics Curator, J:57761]
Show

Allelic Composition: Ctcfltm1.1Vloc/Ctcfltm1.1Vloc
Genetic Background: involves: 129S1/Sv * C57BL/6 * SJL

 MP:0008108 abnormal small intestinal villus morphology "any structural anomaly of the tiny hair-like projections that protrude from the inside of the small intestine that contain blood vessels that capture digested nutrients that are absorbed through the intestinal wall; the villi increase the absorptive surface area of the small intestine by approximately 30-fold" [MGI:csmith "Cynthia L. Smith, Mouse Genome Informatics Curator", MGI:rbabiuk "Randall Babiuk, Mouse Genome Informatics Curator"]
Show

Allelic Composition: Gt(ROSA)26Sortm1(cre/ERT)Brn/Gt(ROSA)26Sor+,Lin9tm1.1Sgau/Lin9tm1.1Sgau
Genetic Background: involves: 129P2/OlaHsd * 129S6/SvEvTac * C57BL/6 * SJL

 MP:0008365 adenohypophysis hypoplasia "underdevelopment or reduced size, usually due to a reduced cell number, of the anterior lobe of the pituitary gland" [MGI:csmith "Cynthia L. Smith, Mouse Genome Informatics Curator"]
Show

Allelic Composition: Cdk4tm1Kiyo/Cdk4tm1Kiyo,Lin9tm1Orc/Lin9tm1Orc
Genetic Background: involves: 129S1/Sv

 MP:0009593 absent chorion "absence of the outermost extraembryonic membrane" [MGI:anna "Anna V. Anagnostopoulos, Mouse Genome Informatics Curator"]
Show

Allelic Composition: Ctcfltm1.1Vloc/Ctcfltm1.1Vloc
Genetic Background: involves: 129S1/Sv * C57BL/6 * SJL

 MP:0009762 abnormal mitotic spindle assembly checkpoint "an anomaly in the process that normally prevents inaccurate segregation of chromosome by inhibiting cell-cycle progression in response to a signal generated by mitotic spindle damage or by chromosomes that have not attached to microtubules" [PMID:19372138]
Show

Allelic Composition: Gt(ROSA)26Sortm1(cre/ERT)Brn/Gt(ROSA)26Sor+,Lin9tm1.1Sgau/Lin9tm1.1Sgau
Genetic Background: involves: 129P2/OlaHsd * 129S6/SvEvTac * C57BL/6 * SJL

 MP:0010157 abnormal small intestinal crypt cell proliferation "anomaly in the ability of the cells that make up the tubular intestinal glands found in the mucosal membranes of the small intestine to undergo expansion by cell division" [MGI:jbubier "Jason Bubier, Mouse Genome Informatics Curator"]
Show

Allelic Composition: Gt(ROSA)26Sortm1(cre/ERT)Brn/Gt(ROSA)26Sor+,Lin9tm1.1Sgau/Lin9tm1.1Sgau
Genetic Background: involves: 129P2/OlaHsd * 129S6/SvEvTac * C57BL/6 * SJL

 MP:0011095 complete embryonic lethality between implantation and placentation "death of all organisms of a given genotype in a population between the point of implantation and the initiation of placentation (Mus: E4.5 to less than E9)" [MGI:csmith]
Show

Allelic Composition: Ctcfltm1.1Vloc/Ctcfltm1.1Vloc
Genetic Background: involves: 129S1/Sv * C57BL/6 * SJL

 MP:0011100 complete preweaning lethality "death of all organisms of a given genotype in a population between fertilization and weaning age (Mus: approximately 3-4 weeks of age)" [MGI:csmith]
Show

Allelic Composition: Gt(ROSA)26Sortm1(cre/ERT)Brn/Gt(ROSA)26Sor+,Lin9tm1.1Sgau/Lin9tm1.1Sgau
Genetic Background: involves: 129P2/OlaHsd * 129S6/SvEvTac * C57BL/6 * SJL

 MP:0011184 absent embryonic epiblast "absence of the tissue derived from the inner cell mass that gives rise to the ectoderm, endoderm and mesoderm of the embryo proper and to the extraembryonic mesoderm" [PMID:21123814]
Show

Allelic Composition: Ctcfltm1.1Vloc/Ctcfltm1.1Vloc
Genetic Background: involves: 129S1/Sv * C57BL/6 * SJL

 MP:0011704 decreased fibroblast proliferation "reduction in the expansion rate of a fibroblast cell population by cell division" [MGI:csmith]
Show

Allelic Composition: Gt(ROSA)26Sortm1(cre/ERT)Brn/Gt(ROSA)26Sor+,Lin9tm1.1Sgau/Lin9tm1.1Sgau
Genetic Background: involves: 129P2/OlaHsd * 129S6/SvEvTac * C57BL/6 * SJL

 MP:0012114 absent inner cell mass proliferation 
Show

Allelic Composition: Ctcfltm1.1Vloc/Ctcfltm1.1Vloc
Genetic Background: involves: 129S1/Sv * C57BL/6 * SJL

  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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