ENSDARG00000029472


Danio rerio

Features
Gene ID: ENSDARG00000029472
  
Biological name :afdna
  
Synonyms : afadin, adherens junction formation factor a / afdna
  
Possible biological names infered from orthology : Afadin / afadin, adherens junction formation factor / AFDN / P55196 / Q9QZQ1
  
Species: Danio rerio
  
Chr. number: 20
Strand: -1
Band:
Gene start: 43120132
Gene end: 43353097
  
Corresponding Affymetrix probe sets: Dr.15859.1.S1_at (Zebrafish Array)   
  
Cross references: Ensembl peptide - ENSDARP00000127130
Ensembl peptide - ENSDARP00000111104
NCBI entrez gene - 558359     See in Manteia.
RefSeq - XM_021468681
RefSeq - XM_021468685
RefSeq - XM_021468691
RefSeq - XM_021468692
swissprot - U3JA65
swissprot - E7F4R0
ZFIN ID - ZDB-GENE-050419-52
Ensembl - ENSDARG00000029472
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 AFDNENSGALG00000011329Gallus gallus
 AFDNENSG00000130396Homo sapiens
 AfdnENSMUSG00000068036Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
ppp1r9a / protein phosphatase 1, regulatory subunit 9A / Q9ULJ8* / protein phosphatase 1, regulatory (inhibitor) subunit 9A*ENSDARG000000613049
ppp1r9ala / protein phosphatase 1 regulatory subunit 9A-like AENSDARG000000635808
ppp1r9alb / protein phosphatase 1 regulatory subunit 9A-like BENSDARG000000745758
ppp1r9ba / protein phosphatase 1, regulatory subunit 9Ba / Q6R891* / PPP1R9B* / protein phosphatase 1 regulatory subunit 9B*ENSDARG000000793667
ppp1r9bb / protein phosphatase 1, regulatory subunit 9Bb / Q6R891* / PPP1R9B* / protein phosphatase 1 regulatory subunit 9B*ENSDARG000000717097
FO704786.1 / Q8IZD0* / Q8K070* / SAMD14* / sterile alpha motif domain containing 14* / Sterile alpha motif domain-containing protein 14 *ENSDARG000001011713


Protein motifs (from Interpro)
Interpro ID Name
 IPR000159  Ras-associating (RA) domain
 IPR000253  Forkhead-associated (FHA) domain
 IPR001478  PDZ domain
 IPR002710  Dilute domain
 IPR008984  SMAD/FHA domain superfamily
 IPR028842  Afadin
 IPR029071  Ubiquitin-like domain superfamily


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0007165 signal transduction IEA
 biological_processGO:0032880 regulation of protein localization IBA
 biological_processGO:0034332 adherens junction organization IBA
 cellular_componentGO:0005911 cell-cell junction IEA
 cellular_componentGO:0005913 cell-cell adherens junction IBA
 molecular_functionGO:0050839 cell adhesion molecule binding IBA


Pathways (from Reactome)
Pathway description
Adherens junctions interactions


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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