ENSDARG00000030887


Danio rerio

Features
Gene ID: ENSDARG00000030887
  
Biological name :phf23a
  
Synonyms : PHD finger protein 23a / phf23a / Q5BJ10
  
Possible biological names infered from orthology : PHD finger protein 23 / PHF23 / Q8BSN5 / Q9BUL5
  
Species: Danio rerio
  
Chr. number: 5
Strand: -1
Band:
Gene start: 24240318
Gene end: 24245218
  
Corresponding Affymetrix probe sets: Dr.528.1.A1_at (Zebrafish Array)   Dr.528.2.S1_at (Zebrafish Array)   NM_001013499_at (Zebrafish Genome Array with custom cdf files)   
  
Cross references: Ensembl peptide - ENSDARP00000042480
NCBI entrez gene - 541372     See in Manteia.
RefSeq - NM_001013499
RefSeq Peptide - NP_001013517
swissprot - A8E514
swissprot - Q5BJ10
ZFIN ID - ZDB-GENE-050320-67
Ensembl - ENSDARG00000030887
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 PHF23ENSG00000040633Homo sapiens
 Phf23ENSMUSG00000018572Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
phf23b / Q7SXB5 / PHD finger protein 23b / PHF23* / Q9BUL5* / Q8BSN5* / PHD finger protein 23*ENSDARG0000003630548
phf13 / PHD finger protein 13 / Q86YI8* / Q8K2W6*ENSDARG0000010202329


Protein motifs (from Interpro)
Interpro ID Name
 IPR001965  Zinc finger, PHD-type
 IPR011011  Zinc finger, FYVE/PHD-type
 IPR013083  Zinc finger, RING/FYVE/PHD-type
 IPR019786  Zinc finger, PHD-type, conserved site
 IPR019787  Zinc finger, PHD-finger


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0006914 autophagy IEA
 biological_processGO:0007076 mitotic chromosome condensation IBA
 biological_processGO:0031398 positive regulation of protein ubiquitination ISS
 biological_processGO:1901097 negative regulation of autophagosome maturation ISS
 biological_processGO:1902902 negative regulation of autophagosome assembly ISS
 cellular_componentGO:0005634 nucleus IEA
 cellular_componentGO:0005737 cytoplasm IEA
 molecular_functionGO:0003682 chromatin binding IBA
 molecular_functionGO:0046872 metal ion binding IEA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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