ENSDARG00000032129


Danio rerio

Features
Gene ID: ENSDARG00000032129
  
Biological name :gtf2f1
  
Synonyms : general transcription factor IIF, polypeptide 1 / gtf2f1
  
Possible biological names infered from orthology : general transcription factor IIF subunit 1 / P35269 / Q3THK3 / ral transcription factor IIF subunit 1
  
Species: Danio rerio
  
Chr. number: 3
Strand: -1
Band:
Gene start: 33921971
Gene end: 33941875
  
Corresponding Affymetrix probe sets: Dr.11641.1.S1_at (Zebrafish Array)   NM_199729_at (Zebrafish Genome Array with custom cdf files)   
  
Cross references: Ensembl peptide - ENSDARP00000047659
Ensembl peptide - ENSDARP00000103686
Ensembl peptide - ENSDARP00000125649
Ensembl peptide - ENSDARP00000125934
Ensembl peptide - ENSDARP00000009277
NCBI entrez gene - 325832     See in Manteia.
RefSeq - NM_199729
RefSeq Peptide - NP_956023
swissprot - F6NYB3
swissprot - F2Z4T1
swissprot - I3IRY8
swissprot - I3ISP5
swissprot - Q5PNQ6
ZFIN ID - ZDB-GENE-030131-4557
Ensembl - ENSDARG00000032129
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 GTF2F1ENSG00000125651Homo sapiens
 Gtf2f1ENSMUSG00000002658Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
No match


Protein motifs (from Interpro)
Interpro ID Name
 IPR008851  Transcription initiation factor IIF, alpha subunit
 IPR011039  Transcription Factor IIF, Rap30/Rap74, interaction
 IPR011991  ArsR-like helix-turn-helix domain


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0006367 transcription initiation from RNA polymerase II promoter IEA
 biological_processGO:0032968 positive regulation of transcription elongation from RNA polymerase II promoter IEA
 cellular_componentGO:0005634 nucleus IEA
 molecular_functionGO:0003677 DNA binding IEA


Pathways (from Reactome)
Pathway description
Formation of RNA Pol II elongation complex
Formation of the Early Elongation Complex
RNA Polymerase II Pre-transcription Events
TP53 Regulates Transcription of DNA Repair Genes
FGFR2 alternative splicing
RNA polymerase II transcribes snRNA genes
mRNA Capping
mRNA Splicing - Major Pathway
mRNA Splicing - Minor Pathway
Processing of Capped Intron-Containing Pre-mRNA
RNA Polymerase II Promoter Escape
RNA Polymerase II Transcription Pre-Initiation And Promoter Opening
RNA Polymerase II Transcription Initiation
RNA Polymerase II Transcription Elongation
RNA Polymerase II Transcription Initiation And Promoter Clearance
RNA Pol II CTD phosphorylation and interaction with CE
Estrogen-dependent gene expression


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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