ENSDARG00000032876


Danio rerio

Features
Gene ID: ENSDARG00000032876
  
Biological name :trit1
  
Synonyms : trit1 / tRNA isopentenyltransferase 1
  
Possible biological names infered from orthology : Q80UN9 / Q9H3H1
  
Species: Danio rerio
  
Chr. number: 19
Strand: -1
Band:
Gene start: 30722767
Gene end: 30800082
  
Corresponding Affymetrix probe sets: Dr.11495.1.A1_at (Zebrafish Array)   NM_001044774_at (Zebrafish Genome Array with custom cdf files)   
  
Cross references: Ensembl peptide - ENSDARP00000045503
Ensembl peptide - ENSDARP00000104694
Ensembl peptide - ENSDARP00000110903
NCBI entrez gene - 553523     See in Manteia.
RefSeq - NM_001044774
RefSeq Peptide - NP_001038239
swissprot - F1Q4Z4
swissprot - A4IGE5
swissprot - Q1LWL7
ZFIN ID - ZDB-GENE-060503-297
Ensembl - ENSDARG00000032876
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 TRIT1ENSGALG00000003851Gallus gallus
 TRIT1ENSG00000043514Homo sapiens
 Trit1ENSMUSG00000028653Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
No match


Protein motifs (from Interpro)
Interpro ID Name
 IPR013087  Zinc finger C2H2-type
 IPR018022  IPP transferase
 IPR022755  Zinc finger, double-stranded RNA binding
 IPR027417  P-loop containing nucleoside triphosphate hydrolase
 IPR030666  tRNA isopentenyltransferase, eukaryotes


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0006400 tRNA modification IBA
 biological_processGO:0008033 tRNA processing IEA
 cellular_componentGO:0005737 cytoplasm IEA
 cellular_componentGO:0005739 mitochondrion IBA
 molecular_functionGO:0000166 nucleotide binding IEA
 molecular_functionGO:0005524 ATP binding IEA
 molecular_functionGO:0016740 transferase activity IEA
 molecular_functionGO:0046872 metal ion binding IEA
 molecular_functionGO:0052381 tRNA dimethylallyltransferase activity IBA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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contact: otassy@igbmc.fr