ENSG00000043514


Homo sapiens

Features
Gene ID: ENSG00000043514
  
Biological name :TRIT1
  
Synonyms : Q9H3H1 / TRIT1 / tRNA isopentenyltransferase 1
  
Possible biological names infered from orthology :
  
Species: Homo sapiens
  
Chr. number: 1
Strand: -1
Band: p34.2
Gene start: 39841022
Gene end: 39883511
  
Corresponding Affymetrix probe sets: 218617_at (Human Genome U133 Plus 2.0 Array)   
  
Cross references: Ensembl peptide - ENSP00000474264
Ensembl peptide - ENSP00000474151
Ensembl peptide - ENSP00000474768
Ensembl peptide - ENSP00000321810
Ensembl peptide - ENSP00000361905
Ensembl peptide - ENSP00000388333
Ensembl peptide - ENSP00000437700
Ensembl peptide - ENSP00000437896
Ensembl peptide - ENSP00000473708
Ensembl peptide - ENSP00000473745
Ensembl peptide - ENSP00000473773
NCBI entrez gene - 54802     See in Manteia.
OMIM - 617840
RefSeq - XM_006710706
RefSeq - NM_001312691
RefSeq - NM_001312692
RefSeq - NM_017646
RefSeq - XM_005270954
RefSeq Peptide - NP_001299621
RefSeq Peptide - NP_060116
RefSeq Peptide - NP_001299620
swissprot - Q9H3H1
swissprot - S4R2X1
swissprot - S4R2Z0
swissprot - S4R3C5
swissprot - S4R3F4
swissprot - S4R3U8
swissprot - B4DK89
swissprot - Q3T7B4
Ensembl - ENSG00000043514
  
Related genetic diseases (OMIM): 617873 - Combined oxidative phosphorylation deficiency 35, 617873
See expression report in BioGPS
See gene description in Wikigenes
See gene description in GeneCards
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 trit1ENSDARG00000032876Danio rerio
 TRIT1ENSGALG00000003851Gallus gallus
 Trit1ENSMUSG00000028653Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
No match


Protein motifs (from Interpro)
Interpro ID Name
 IPR003604  Matrin/U1-C-like, C2H2-type zinc finger
 IPR018022  IPP transferase
 IPR022755  Zinc finger, double-stranded RNA binding
 IPR027417  P-loop containing nucleoside triphosphate hydrolase
 IPR030666  tRNA isopentenyltransferase, eukaryotes
 IPR036236  Zinc finger C2H2 superfamily


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0006400 tRNA modification IBA
 biological_processGO:0008033 tRNA processing IEA
 biological_processGO:0009058 biosynthetic process IEA
 biological_processGO:0070900 mitochondrial tRNA modification TAS
 cellular_componentGO:0005575 cellular_component ND
 cellular_componentGO:0005737 cytoplasm IEA
 cellular_componentGO:0005739 mitochondrion IBA
 cellular_componentGO:0005759 mitochondrial matrix TAS
 molecular_functionGO:0000166 nucleotide binding IEA
 molecular_functionGO:0003676 nucleic acid binding IEA
 molecular_functionGO:0004161 dimethylallyltranstransferase activity IEA
 molecular_functionGO:0005524 ATP binding IEA
 molecular_functionGO:0008270 zinc ion binding IEA
 molecular_functionGO:0016740 transferase activity IEA
 molecular_functionGO:0046872 metal ion binding IEA
 molecular_functionGO:0052381 tRNA dimethylallyltransferase activity EXP


Pathways (from Reactome)
Pathway description
tRNA modification in the nucleus and cytosol
tRNA modification in the mitochondrion


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

0 s.

 
External programs and data are copyrighted by and are the property of their respective authors.
The Manteia system, data and analyses are provided "as is" with no warranties, expressed or implied as to capabilities or accuracy. User assumes the entire risk as to the results and performance of the software, data and documentation


                   

© Olivier Tassy / Olivier Pourquie 2007-2024
contact: otassy@igbmc.fr