ENSDARG00000034518


Danio rerio

Features
Gene ID: ENSDARG00000034518
  
Biological name :trdmt1
  
Synonyms : trdmt1 / tRNA aspartic acid methyltransferase 1
  
Possible biological names infered from orthology : O14717 / O55055 / tRNA (cytosine(38)-C(5))-methyltransferase
  
Species: Danio rerio
  
Chr. number: 24
Strand: -1
Band:
Gene start: 32151629
Gene end: 32196412
  
Corresponding Affymetrix probe sets:
  
Cross references: Ensembl peptide - ENSDARP00000048632
NCBI entrez gene - 449878     See in Manteia.
RefSeq - NM_001018143
RefSeq Peptide - NP_001018153
swissprot - Q588C1
ZFIN ID - ZDB-GENE-041008-138
Ensembl - ENSDARG00000034518
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 TRDMT1ENSGALG00000008686Gallus gallus
 O14717ENSG00000107614Homo sapiens
 O55055ENSMUSG00000026723Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
No match


Protein motifs (from Interpro)
Interpro ID Name
 IPR001525  C-5 cytosine methyltransferase
 IPR029063  S-adenosyl-L-methionine-dependent methyltransferase
 IPR031303  DNA methylase, C-5 cytosine-specific, conserved site


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0032259 methylation IEA
 cellular_componentGO:0005575 cellular_component ND
 molecular_functionGO:0008168 methyltransferase activity IEA
 molecular_functionGO:0016740 transferase activity IEA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 ZFA:0000008 brain brain malformed , abnormal
Show

 ZFA:0000054 pericardium pericardium edematous , abnormal
Show

 ZFA:0000107 eye eye decreased size , abnormal
eye malformed , abnormal
Show

 ZFA:0000155 somite somite malformed , abnormal
Show

 ZFA:0001117 post-vent region post-vent region malformed , abnormal
Show

  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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contact: otassy@igbmc.fr