ENSDARG00000034897


Danio rerio

Features
Gene ID: ENSDARG00000034897
  
Biological name :rps10
  
Synonyms : ribosomal protein S10 / rps10
  
Possible biological names infered from orthology : P46783 / P63325 / RPS10-NUDT3 / RPS10-NUDT3 readthrough
  
Species: Danio rerio
  
Chr. number: 6
Strand: -1
Band:
Gene start: 54174696
Gene end: 54180699
  
Corresponding Affymetrix probe sets: Dr.25291.2.A1_at (Zebrafish Array)   
  
Cross references: Ensembl peptide - ENSDARP00000134332
Ensembl peptide - ENSDARP00000045900
Ensembl peptide - ENSDARP00000124639
NCBI entrez gene - 394121     See in Manteia.
swissprot - F8W2R0
swissprot - Q7T1J9
ZFIN ID - ZDB-GENE-040426-1481
Ensembl - ENSDARG00000034897
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 RPS10ENSGALG00000002813Gallus gallus
 RPS10ENSG00000124614Homo sapiens
 RPS10-NUDT3ENSG00000270800Homo sapiens
 Rps10ENSMUSG00000052146Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
No match


Protein motifs (from Interpro)
Interpro ID Name
 IPR005326  Plectin/S10, N-terminal


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0000028 ribosomal small subunit assembly IBA
 cellular_componentGO:0005840 ribosome IEA
 cellular_componentGO:0022627 cytosolic small ribosomal subunit IBA
 molecular_functionGO:0003723 RNA binding IBA
 molecular_functionGO:0003735 structural constituent of ribosome IBA


Pathways (from Reactome)
Pathway description
L13a-mediated translational silencing of Ceruloplasmin expression
SRP-dependent cotranslational protein targeting to membrane
Major pathway of rRNA processing in the nucleolus and cytosol
Translation initiation complex formation
Formation of a pool of free 40S subunits
Formation of the ternary complex, and subsequently, the 43S complex
Ribosomal scanning and start codon recognition
GTP hydrolysis and joining of the 60S ribosomal subunit
Nonsense Mediated Decay (NMD) independent of the Exon Junction Complex (EJC)
Nonsense Mediated Decay (NMD) enhanced by the Exon Junction Complex (EJC)


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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