ENSDARG00000035427


Danio rerio

Features
Gene ID: ENSDARG00000035427
  
Biological name :surf6
  
Synonyms : surf6 / surfeit 6
  
Possible biological names infered from orthology : O75683 / P70279 / surfeit gene 6
  
Species: Danio rerio
  
Chr. number: 5
Strand: -1
Band:
Gene start: 33275150
Gene end: 33281156
  
Corresponding Affymetrix probe sets: Dr.17081.1.S1_at (Zebrafish Array)   NM_201065_at (Zebrafish Genome Array with custom cdf files)   
  
Cross references: Ensembl peptide - ENSDARP00000051343
Ensembl peptide - ENSDARP00000121048
NCBI entrez gene - 394040     See in Manteia.
RefSeq - XM_005171804
RefSeq - NM_201065
RefSeq Peptide - NP_957359
swissprot - Q6DRK9
ZFIN ID - ZDB-GENE-040426-1333
Ensembl - ENSDARG00000035427
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 SURF6ENSGALG00000038413Gallus gallus
 SURF6ENSG00000148296Homo sapiens
 Surf6ENSMUSG00000036160Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
No match


Protein motifs (from Interpro)
Interpro ID Name
 IPR007019  Surfeit locus 6
 IPR029190  Ribosomal RNA-processing protein 14/surfeit locus protein 6, C-terminal domain


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0007507 heart development IMP
 biological_processGO:0042273 ribosomal large subunit biogenesis IBA
 biological_processGO:0042274 ribosomal small subunit biogenesis IBA
 cellular_componentGO:0005730 nucleolus IBA
 cellular_componentGO:0022625 cytosolic large ribosomal subunit IBA
 molecular_functionGO:0003677 DNA binding IBA
 molecular_functionGO:0003723 RNA binding IBA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 ZFA:0000008 brain brain necrotic , abnormal
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 ZFA:0000009 cardiac ventricle cardiac ventricle decreased size , abnormal
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 ZFA:0000012 central nervous system central nervous system necrotic , abnormal
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 ZFA:0000029 hindbrain hindbrain quality , abnormal
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 ZFA:0000054 pericardium pericardium edematous , abnormal
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 ZFA:0000084 yolk yolk circular , abnormal
yolk grey , abnormal
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 ZFA:0000107 eye eye decreased size , abnormal
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 ZFA:0000110 fourth ventricle fourth ventricle distended , abnormal
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 ZFA:0000112 gut gut hypoplastic , abnormal
gut quality , abnormal
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 ZFA:0000114 heart heart quality , abnormal
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 ZFA:0000123 liver liver hypoplastic , abnormal
liver quality , abnormal
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 ZFA:0001114 head head decreased size , abnormal
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 ZFA:0001115 trunk trunk necrotic , abnormal
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Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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