ENSDARG00000036282


Danio rerio

Features
Gene ID: ENSDARG00000036282
  
Biological name :rnaset2
  
Synonyms : B8XY56 / ribonuclease T2 / rnaset2
  
Possible biological names infered from orthology : AL159163.1 / C0HKG5 / C0HKG6 / O00584 / Ribonuclease T2-A / Rnaset2a / Rnaset2b
  
Species: Danio rerio
  
Chr. number: 13
Strand: 1
Band:
Gene start: 7049210
Gene end: 7065999
  
Corresponding Affymetrix probe sets: Dr.20848.1.A1_at (Zebrafish Array)   NM_001030064_at (Zebrafish Genome Array with custom cdf files)   
  
Cross references: Ensembl peptide - ENSDARP00000141181
Ensembl peptide - ENSDARP00000156176
Ensembl peptide - ENSDARP00000144562
Ensembl peptide - ENSDARP00000111898
Ensembl peptide - ENSDARP00000132627
NCBI entrez gene - 791890     See in Manteia.
RefSeq - NM_001320391
RefSeq - NM_001030064
RefSeq Peptide - NP_001025235
RefSeq Peptide - NP_001307320
swissprot - B8XY56
swissprot - A0A0R4IHJ3
ZFIN ID - ZDB-GENE-030131-2513
Ensembl - ENSDARG00000036282
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 RNASET2ENSGALG00000011426Gallus gallus
 AL159163.1ENSG00000249141Homo sapiens
 O00584ENSG00000026297Homo sapiens
 C0HKG5ENSMUSG00000095687Mus musculus
 C0HKG5ENSMUSG00000094724Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
rnaset2l / ribonuclease T2, likeENSDARG0000005841328


Protein motifs (from Interpro)
Interpro ID Name
 IPR001568  Ribonuclease T2-like
 IPR018188  Ribonuclease T2, His active site 1
 IPR033130  Ribonuclease T2, His active site 2
 IPR033697  Ribonuclease T2, eukaryotic


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0016075 rRNA catabolic process IMP
 biological_processGO:0090305 nucleic acid phosphodiester bond hydrolysis IEA
 biological_processGO:0090502 RNA phosphodiester bond hydrolysis, endonucleolytic IEA
 cellular_componentGO:0005576 extracellular region IEA
 cellular_componentGO:0005764 lysosome IEA
 cellular_componentGO:0005783 endoplasmic reticulum IEA
 cellular_componentGO:0005788 endoplasmic reticulum lumen IEA
 cellular_componentGO:0043202 lysosomal lumen IEA
 molecular_functionGO:0003723 RNA binding IEA
 molecular_functionGO:0004518 nuclease activity IEA
 molecular_functionGO:0004519 endonuclease activity IEA
 molecular_functionGO:0016787 hydrolase activity IEA
 molecular_functionGO:0033897 ribonuclease T2 activity IEA


Pathways (from Reactome)
Pathway description
Neutrophil degranulation


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 ZFA:0000008 brain brain white matter damaged , abnormal
Show

 ZFA:0001083 ventricular zone ventricular zone damaged , abnormal
ventricular zone astrocyte increased amount , abnormal
Show

 ZFA:0001261 ventricular system ventricular system increased size , abnormal
Show

 ZFA:0001626 cerebral spinal fluid cerebral spinal fluid increased volume , abnormal
Show

 ZFA:0009067 CNS neuron (sensu Vertebrata) CNS neuron (sensu Vertebrata) lysosome increased size , abnormal
Show

  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

0 s.

 
External programs and data are copyrighted by and are the property of their respective authors.
The Manteia system, data and analyses are provided "as is" with no warranties, expressed or implied as to capabilities or accuracy. User assumes the entire risk as to the results and performance of the software, data and documentation


                   

© Olivier Tassy / Olivier Pourquie 2007-2024
contact: otassy@igbmc.fr