ENSDARG00000036415


Danio rerio

Features
Gene ID: ENSDARG00000036415
  
Biological name :glb1
  
Synonyms : galactosidase, beta 1 / glb1
  
Possible biological names infered from orthology : P16278 / P23780
  
Species: Danio rerio
  
Chr. number: 1
Strand: 1
Band:
Gene start: 52462068
Gene end: 52478746
  
Corresponding Affymetrix probe sets:
  
Cross references: Ensembl peptide - ENSDARP00000106759
NCBI entrez gene - 548343     See in Manteia.
RefSeq - XM_005160132
swissprot - A2BG54
ZFIN ID - ZDB-GENE-050410-9
Ensembl - ENSDARG00000036415
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 GLB1ENSGALG00000040028Gallus gallus
 GLB1ENSG00000170266Homo sapiens
 Glb1ENSMUSG00000045594Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
glb1l / galactosidase, beta 1-like / Q6UWU2*ENSDARG0000002995554
si:dkey-224e22.2 / Gm1110* / GLB1L2* / GLB1L3* / Q8IW92* / Q8NCI6* / galactosidase beta 1 like 3* / galactosidase beta 1 like 2*ENSDARG0000003494132
b3gat1b / beta-1,3-glucuronyltransferase 1 (glucuronosyltransferase P) b / Q8NCI6* / GLB1L3* / Q8IW92* / GLB1L2* / galactosidase beta 1 like 3* / galactosidase beta 1 like 2*ENSDARG0000005527914


Protein motifs (from Interpro)
Interpro ID Name
 IPR001944  Glycoside hydrolase, family 35
 IPR008979  Galactose-binding-like domain superfamily
 IPR017853  Glycoside hydrolase superfamily
 IPR019801  Glycoside hydrolase, family 35, conserved site
 IPR025300  Beta-galactosidase jelly roll domain
 IPR026283  Beta-galactosidase 1-like
 IPR031330  Glycoside hydrolase 35, catalytic domain


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0005975 carbohydrate metabolic process IEA
 biological_processGO:0008152 metabolic process IEA
 molecular_functionGO:0004553 hydrolase activity, hydrolyzing O-glycosyl compounds IEA
 molecular_functionGO:0004565 beta-galactosidase activity IDA
 molecular_functionGO:0016787 hydrolase activity IEA
 molecular_functionGO:0016798 hydrolase activity, acting on glycosyl bonds IEA


Pathways (from Reactome)
Pathway description
Glycosphingolipid metabolism
Keratan sulfate degradation
HS-GAG degradation
Sialic acid metabolism
Neutrophil degranulation


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
 ENSDARG00000008832 neu1 / neuraminidase 1 / O35657* / Q99519*  / complex






 

0 s.

 
External programs and data are copyrighted by and are the property of their respective authors.
The Manteia system, data and analyses are provided "as is" with no warranties, expressed or implied as to capabilities or accuracy. User assumes the entire risk as to the results and performance of the software, data and documentation


                   

© Olivier Tassy / Olivier Pourquie 2007-2024
contact: otassy@igbmc.fr