ENSDARG00000036541


Danio rerio

Features
Gene ID: ENSDARG00000036541
  
Biological name :rhbdf1a
  
Synonyms : Q6GMF8 / rhbdf1a / rhomboid 5 homolog 1a (Drosophila)
  
Possible biological names infered from orthology : Q6PIX5 / Q96CC6 / RHBDF1 / rhomboid 5 homolog 1
  
Species: Danio rerio
  
Chr. number: 3
Strand: -1
Band:
Gene start: 54896331
Gene end: 54993027
  
Corresponding Affymetrix probe sets:
  
Cross references: Ensembl peptide - ENSDARP00000120685
Ensembl peptide - ENSDARP00000053094
NCBI entrez gene - 798402     See in Manteia.
RefSeq - NM_001002228
RefSeq Peptide - NP_001002228
swissprot - E9QJA8
swissprot - Q6GMF8
ZFIN ID - ZDB-GENE-040704-75
Ensembl - ENSDARG00000036541
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 RHBDF1ENSGALG00000007434Gallus gallus
 Q96CC6ENSG00000007384Homo sapiens
 Q6PIX5ENSMUSG00000020282Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
rhbdf1b / rhomboid 5 homolog 1b (Drosophila) / RHBDF1* / Q6PIX5* / Q96CC6* / rhomboid 5 homolog 1*ENSDARG0000001736780


Protein motifs (from Interpro)
Interpro ID Name
 IPR002610  Peptidase S54, rhomboid
 IPR020846  Major facilitator superfamily domain
 IPR022241  Rhomboid serine protease
 IPR022764  Peptidase S54, rhomboid domain


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0006508 proteolysis IEA
 biological_processGO:0008283 cell proliferation ISS
 biological_processGO:0015031 protein transport IEA
 biological_processGO:0016477 cell migration ISS
 biological_processGO:0042058 regulation of epidermal growth factor receptor signaling pathway IBA
 biological_processGO:0050708 regulation of protein secretion IBA
 biological_processGO:0050709 negative regulation of protein secretion ISS
 biological_processGO:0061136 regulation of proteasomal protein catabolic process ISS
 cellular_componentGO:0000139 Golgi membrane ISS
 cellular_componentGO:0005783 endoplasmic reticulum IEA
 cellular_componentGO:0005789 endoplasmic reticulum membrane ISS
 cellular_componentGO:0005794 Golgi apparatus IEA
 cellular_componentGO:0016020 membrane IEA
 cellular_componentGO:0016021 integral component of membrane IEA
 molecular_functionGO:0004252 serine-type endopeptidase activity IEA
 molecular_functionGO:0008233 peptidase activity IEA
 molecular_functionGO:0016787 hydrolase activity IEA
 molecular_functionGO:0019838 growth factor binding IEA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

1 s.

 
External programs and data are copyrighted by and are the property of their respective authors.
The Manteia system, data and analyses are provided "as is" with no warranties, expressed or implied as to capabilities or accuracy. User assumes the entire risk as to the results and performance of the software, data and documentation


                   

© Olivier Tassy / Olivier Pourquie 2007-2024
contact: otassy@igbmc.fr