ENSDARG00000036625


Danio rerio

Features
Gene ID: ENSDARG00000036625
  
Biological name :polr2f
  
Synonyms : polr2f / polymerase (RNA) II (DNA directed) polypeptide F
  
Possible biological names infered from orthology : DNA-directed RNA polymerases I, II, and III subunit RPABC2 / P61218 / P61219 / RNA polymerase II subunit F
  
Species: Danio rerio
  
Chr. number: 3
Strand: -1
Band:
Gene start: 1511199
Gene end: 1520657
  
Corresponding Affymetrix probe sets: Dr.20523.1.S1_at (Zebrafish Array)   NM_001002544_at (Zebrafish Genome Array with custom cdf files)   
  
Cross references: Ensembl peptide - ENSDARP00000053200
NCBI entrez gene - 436817     See in Manteia.
RefSeq - NM_001002544
RefSeq Peptide - NP_001002544
swissprot - Q6DGS5
ZFIN ID - ZDB-GENE-040718-279
Ensembl - ENSDARG00000036625
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 POLR2FENSGALG00000012291Gallus gallus
 P61218ENSG00000100142Homo sapiens
 P61219ENSMUSG00000033020Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
No match


Protein motifs (from Interpro)
Interpro ID Name
 IPR006110  RNA polymerase, subunit omega/K/RPB6
 IPR006111  Archaeal RpoK/eukaryotic RPB6 RNA polymerase subunit
 IPR012293  RNA polymerase subunit, RPB6/omega
 IPR020708  DNA-directed RNA polymerase, 14-18kDa subunit, conserved site
 IPR028363  DNA-directed RNA polymerase, subunit RPB6


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0006351 transcription, DNA-templated IEA
 biological_processGO:0006360 transcription by RNA polymerase I IEA
 biological_processGO:0006366 transcription by RNA polymerase II IEA
 biological_processGO:0006383 transcription by RNA polymerase III IEA
 cellular_componentGO:0005634 nucleus IEA
 cellular_componentGO:0005665 DNA-directed RNA polymerase II, core complex IBA
 cellular_componentGO:0005666 DNA-directed RNA polymerase III complex IBA
 cellular_componentGO:0005736 DNA-directed RNA polymerase I complex IBA
 molecular_functionGO:0001054 RNA polymerase I activity IBA
 molecular_functionGO:0001055 RNA polymerase II activity IBA
 molecular_functionGO:0001056 RNA polymerase III activity IBA
 molecular_functionGO:0003677 DNA binding IEA
 molecular_functionGO:0003899 DNA-directed 5"-3" RNA polymerase activity IEA


Pathways (from Reactome)
Pathway description
Formation of RNA Pol II elongation complex
Formation of the Early Elongation Complex
B-WICH complex positively regulates rRNA expression
Transcriptional regulation by small RNAs
RNA Polymerase II Pre-transcription Events
Formation of TC-NER Pre-Incision Complex
Dual incision in TC-NER
Gap-filling DNA repair synthesis and ligation in TC-NER
TP53 Regulates Transcription of DNA Repair Genes
FGFR2 alternative splicing
RNA polymerase II transcribes snRNA genes
mRNA Capping
mRNA Splicing - Major Pathway
mRNA Splicing - Minor Pathway
Processing of Capped Intron-Containing Pre-mRNA
RNA Polymerase I Transcription Initiation
RNA Polymerase I Promoter Escape
RNA Polymerase II Promoter Escape
RNA Polymerase I Chain Elongation
RNA Polymerase II Transcription Pre-Initiation And Promoter Opening
RNA Polymerase I Transcription Termination
RNA Polymerase II Transcription Initiation
RNA Polymerase II Transcription Elongation
RNA Polymerase II Transcription Initiation And Promoter Clearance
RNA Polymerase III Transcription Initiation From Type 1 Promoter
RNA Polymerase III Transcription Initiation From Type 2 Promoter
RNA Polymerase III Transcription Initiation From Type 3 Promoter
RNA Pol II CTD phosphorylation and interaction with CE
Estrogen-dependent gene expression


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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