ENSG00000100142


Homo sapiens

Features
Gene ID: ENSG00000100142
  
Biological name :POLR2F
  
Synonyms : P61218 / POLR2F / RNA polymerase II subunit F
  
Possible biological names infered from orthology :
  
Species: Homo sapiens
  
Chr. number: 22
Strand: 1
Band: q13.1
Gene start: 37952607
Gene end: 38041915
  
Corresponding Affymetrix probe sets: 209511_at (Human Genome U133 Plus 2.0 Array)   232643_at (Human Genome U133 Plus 2.0 Array)   
  
Cross references: Ensembl peptide - ENSP00000475707
Ensembl peptide - ENSP00000475343
Ensembl peptide - ENSP00000476132
Ensembl peptide - ENSP00000476187
Ensembl peptide - ENSP00000332130
Ensembl peptide - ENSP00000384112
Ensembl peptide - ENSP00000385725
Ensembl peptide - ENSP00000389307
Ensembl peptide - ENSP00000403852
Ensembl peptide - ENSP00000406826
Ensembl peptide - ENSP00000475257
Ensembl peptide - ENSP00000475342
NCBI entrez gene - 5435     See in Manteia.
OMIM - 604414
RefSeq - XM_017028832
RefSeq - NM_001301129
RefSeq - NM_001301130
RefSeq - NM_001301131
RefSeq - NM_021974
RefSeq Peptide - NP_068809
RefSeq Peptide - NP_001288058
RefSeq Peptide - NP_001288059
RefSeq Peptide - NP_001288060
swissprot - P61218
swissprot - U3KPV3
swissprot - U3KPY1
swissprot - B0QYL9
swissprot - F8WC47
swissprot - H0Y2U7
swissprot - U3KQB0
swissprot - H0Y439
swissprot - U3KQQ7
swissprot - U3KQS8
swissprot - B0QYL8
Ensembl - ENSG00000100142
  
See expression report in BioGPS
See gene description in Wikigenes
See gene description in GeneCards
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 polr2fENSDARG00000036625Danio rerio
 POLR2FENSGALG00000012291Gallus gallus
 P61219ENSMUSG00000033020Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
No match


Protein motifs (from Interpro)
Interpro ID Name
 IPR006110  RNA polymerase, subunit omega/K/RPB6
 IPR006111  Archaeal RpoK/eukaryotic RPB6 RNA polymerase subunit
 IPR012293  RNA polymerase subunit, RPB6/omega
 IPR020708  DNA-directed RNA polymerase, 14-18kDa subunit, conserved site
 IPR028363  DNA-directed RNA polymerase, subunit RPB6
 IPR036161  RPB6/omega subunit-like superfamily


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0000398 mRNA splicing, via spliceosome TAS
 biological_processGO:0006283 transcription-coupled nucleotide-excision repair TAS
 biological_processGO:0006351 transcription, DNA-templated IEA
 biological_processGO:0006361 transcription initiation from RNA polymerase I promoter TAS
 biological_processGO:0006362 transcription elongation from RNA polymerase I promoter TAS
 biological_processGO:0006363 termination of RNA polymerase I transcription TAS
 biological_processGO:0006366 transcription by RNA polymerase II TAS
 biological_processGO:0006367 transcription initiation from RNA polymerase II promoter TAS
 biological_processGO:0006368 transcription elongation from RNA polymerase II promoter TAS
 biological_processGO:0006370 7-methylguanosine mRNA capping TAS
 biological_processGO:0006383 transcription by RNA polymerase III IEA
 biological_processGO:0008543 fibroblast growth factor receptor signaling pathway TAS
 biological_processGO:0016070 RNA metabolic process TAS
 biological_processGO:0032481 positive regulation of type I interferon production TAS
 biological_processGO:0035019 somatic stem cell population maintenance TAS
 biological_processGO:0042795 snRNA transcription by RNA polymerase II TAS
 biological_processGO:0045815 positive regulation of gene expression, epigenetic TAS
 biological_processGO:0050434 positive regulation of viral transcription TAS
 biological_processGO:0060964 regulation of gene silencing by miRNA TAS
 cellular_componentGO:0001650 fibrillar center IDA
 cellular_componentGO:0005634 nucleus IDA
 cellular_componentGO:0005654 nucleoplasm TAS
 cellular_componentGO:0005665 DNA-directed RNA polymerase II, core complex IEA
 cellular_componentGO:0005666 DNA-directed RNA polymerase III complex IBA
 cellular_componentGO:0005736 DNA-directed RNA polymerase I complex IBA
 cellular_componentGO:0005829 cytosol TAS
 molecular_functionGO:0001054 RNA polymerase I activity IBA
 molecular_functionGO:0001055 RNA polymerase II activity IBA
 molecular_functionGO:0001056 RNA polymerase III activity IBA
 molecular_functionGO:0003677 DNA binding IEA
 molecular_functionGO:0003899 DNA-directed 5"-3" RNA polymerase activity IEA


Pathways (from Reactome)
Pathway description
Formation of RNA Pol II elongation complex
Formation of the Early Elongation Complex
Formation of HIV elongation complex in the absence of HIV Tat
Formation of the HIV-1 Early Elongation Complex
RNA Pol II CTD phosphorylation and interaction with CE during HIV infection
HIV Transcription Initiation
RNA Polymerase II HIV Promoter Escape
Transcription of the HIV genome
Formation of HIV-1 elongation complex containing HIV-1 Tat
Pausing and recovery of Tat-mediated HIV elongation
Abortive elongation of HIV-1 transcript in the absence of Tat
Tat-mediated HIV elongation arrest and recovery
Tat-mediated elongation of the HIV-1 transcript
HIV elongation arrest and recovery
Pausing and recovery of HIV elongation
Viral Messenger RNA Synthesis
Cytosolic sensors of pathogen-associated DNA
MicroRNA (miRNA) biogenesis
NoRC negatively regulates rRNA expression
Transcriptional regulation of pluripotent stem cells
B-WICH complex positively regulates rRNA expression
Transcriptional regulation by small RNAs
PIWI-interacting RNA (piRNA) biogenesis
Activation of anterior HOX genes in hindbrain development during early embryogenesis
RNA Polymerase II Pre-transcription Events
Formation of TC-NER Pre-Incision Complex
Transcription-Coupled Nucleotide Excision Repair (TC-NER)
Dual incision in TC-NER
Gap-filling DNA repair synthesis and ligation in TC-NER
TP53 Regulates Transcription of DNA Repair Genes
FGFR2 alternative splicing
RNA polymerase II transcribes snRNA genes
mRNA Capping
mRNA Splicing - Major Pathway
mRNA Splicing - Minor Pathway
Processing of Capped Intron-Containing Pre-mRNA
RNA Polymerase I Transcription Initiation
RNA Polymerase I Promoter Escape
RNA Polymerase II Promoter Escape
RNA Polymerase I Chain Elongation
RNA Polymerase II Transcription Pre-Initiation And Promoter Opening
RNA Polymerase III Chain Elongation
RNA Polymerase I Transcription Termination
RNA Polymerase III Transcription Termination
RNA Polymerase III Abortive And Retractive Initiation
RNA Polymerase II Transcription Initiation
RNA Polymerase II Transcription Elongation
RNA Polymerase II Transcription Initiation And Promoter Clearance
RNA Polymerase III Transcription Initiation From Type 1 Promoter
RNA Polymerase III Transcription Initiation From Type 2 Promoter
RNA Polymerase III Transcription Initiation From Type 3 Promoter
RNA Pol II CTD phosphorylation and interaction with CE
Signaling by FGFR2 IIIa TM
Estrogen-dependent gene expression


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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