ENSDARG00000036629


Danio rerio

Features
Gene ID: ENSDARG00000036629
  
Biological name :rps14
  
Synonyms : ribosomal protein S14 / rps14
  
Possible biological names infered from orthology : 40S ribosomal protein S14 / P62263 / P62264
  
Species: Danio rerio
  
Chr. number: 21
Strand: 1
Band:
Gene start: 33454147
Gene end: 33458430
  
Corresponding Affymetrix probe sets: Dr.1054.1.S1_at (Zebrafish Array)   NM_200026_at (Zebrafish Genome Array with custom cdf files)   
  
Cross references: Ensembl peptide - ENSDARP00000053207
NCBI entrez gene - 336687     See in Manteia.
RefSeq - NM_200026
RefSeq Peptide - NP_956320
swissprot - Q6PBW3
ZFIN ID - ZDB-GENE-030131-8631
Ensembl - ENSDARG00000036629
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 RPS14ENSGALG00000004588Gallus gallus
 RPS14ENSG00000164587Homo sapiens
 Rps14ENSMUSG00000024608Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
No match


Protein motifs (from Interpro)
Interpro ID Name
 IPR001971  Ribosomal protein S11
 IPR018102  Ribosomal S11, conserved site


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0000028 ribosomal small subunit assembly IBA
 biological_processGO:0000462 maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) IBA
 biological_processGO:0006412 translation IBA
 biological_processGO:0043009 chordate embryonic development IMP
 biological_processGO:0043249 erythrocyte maturation IMP
 biological_processGO:0048821 erythrocyte development IMP
 cellular_componentGO:0005840 ribosome IEA
 cellular_componentGO:0022627 cytosolic small ribosomal subunit IBA
 molecular_functionGO:0003735 structural constituent of ribosome IBA
 molecular_functionGO:0048027 mRNA 5"-UTR binding IBA
 molecular_functionGO:0070181 small ribosomal subunit rRNA binding IBA


Pathways (from Reactome)
Pathway description
L13a-mediated translational silencing of Ceruloplasmin expression
SRP-dependent cotranslational protein targeting to membrane
Major pathway of rRNA processing in the nucleolus and cytosol
Translation initiation complex formation
Formation of a pool of free 40S subunits
Formation of the ternary complex, and subsequently, the 43S complex
Ribosomal scanning and start codon recognition
GTP hydrolysis and joining of the 60S ribosomal subunit
Nonsense Mediated Decay (NMD) independent of the Exon Junction Complex (EJC)
Nonsense Mediated Decay (NMD) enhanced by the Exon Junction Complex (EJC)


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 ZFA:0000035 lens lens absent , abnormal
Show

 ZFA:0000037 anatomical structure anatomical structure increased amount , abnormal
anatomical structure decreased amount , abnormal
anatomical structure right side mislocalised , abnormal
anatomical structure central side mislocalised , abnormal
Show

 ZFA:0000084 yolk yolk edematous , abnormal
Show

 ZFA:0000106 extension extension morphology , abnormal
Show

 ZFA:0000107 eye eye immature , abnormal
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 ZFA:0000114 heart heart edematous , abnormal
Show

 ZFA:0000737 cranium cranium edematous , abnormal
Show

 ZFA:0001094 whole organism whole organism increased amount , abnormal
whole organism decreased amount , abnormal
whole organism decreased life span , abnormal
Show

 ZFA:0001114 head head aplastic , abnormal
head decreased size , abnormal
Show

 ZFA:0009256 nucleate erythrocyte nucleate erythrocyte decreased amount , abnormal
Show

 ZFA:0009325 erythroid lineage cell erythroid lineage cell decreased amount , abnormal
erythroid lineage cell amount , ameliorated
Show

  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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