ENSDARG00000037570


Danio rerio

Features
Gene ID: ENSDARG00000037570
  
Biological name :polr1d
  
Synonyms : polr1d / polymerase (RNA) I polypeptide D / Q6DRI4
  
Possible biological names infered from orthology : P0DPB5 / P0DPB6 / P97304 / RNA polymerase I subunit D
  
Species: Danio rerio
  
Chr. number: 14
Strand: -1
Band:
Gene start: 9077314
Gene end: 9085349
  
Corresponding Affymetrix probe sets:
  
Cross references: Ensembl peptide - ENSDARP00000054709
NCBI entrez gene - 445412     See in Manteia.
RefSeq - XM_005157141
RefSeq - NM_001003888
RefSeq Peptide - NP_001003888
swissprot - Q6DRI4
ZFIN ID - ZDB-GENE-040930-4
Ensembl - ENSDARG00000037570
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 ENSGALG00000007470Gallus gallus
 P0DPB5ENSG00000186184Homo sapiens
 P97304ENSMUSG00000029642Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
No match


Protein motifs (from Interpro)
Interpro ID Name
 IPR008193  DNA-directed RNA polymerase Rpb11, 13-16kDa subunit, conserved site
 IPR009025  DNA-directed RNA polymerase, RBP11-like dimerisation domain
 IPR033898  DNA-directed RNA polymerases I and III subunit AC19


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0006351 transcription, DNA-templated IEA
 biological_processGO:0006360 transcription by RNA polymerase I IEA
 biological_processGO:0006383 transcription by RNA polymerase III IEA
 biological_processGO:0042254 ribosome biogenesis IMP
 biological_processGO:0048703 embryonic viscerocranium morphogenesis IMP
 biological_processGO:0051216 cartilage development IMP
 cellular_componentGO:0005634 nucleus IEA
 cellular_componentGO:0005666 DNA-directed RNA polymerase III complex IBA
 cellular_componentGO:0005736 DNA-directed RNA polymerase I complex IBA
 molecular_functionGO:0001054 RNA polymerase I activity IBA
 molecular_functionGO:0001056 RNA polymerase III activity IBA
 molecular_functionGO:0003677 DNA binding IEA
 molecular_functionGO:0003899 DNA-directed 5"-3" RNA polymerase activity IEA
 molecular_functionGO:0046983 protein dimerization activity IEA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 ZFA:0000008 brain brain necrotic , abnormal
Show

 ZFA:0000012 central nervous system central nervous system necrotic , abnormal
Show

 ZFA:0000042 midbrain hindbrain boundary midbrain hindbrain boundary morphology , abnormal
Show

 ZFA:0000054 pericardium pericardium edematous , abnormal
Show

 ZFA:0000076 swim bladder swim bladder uninflated , abnormal
Show

 ZFA:0000084 yolk yolk circular , abnormal
Show

 ZFA:0000107 eye eye decreased size , abnormal
Show

 ZFA:0000112 gut gut hypoplastic , abnormal
gut quality , abnormal
Show

 ZFA:0000114 heart heart quality , abnormal
Show

 ZFA:0000123 liver liver hypoplastic , abnormal
liver quality , abnormal
Show

 ZFA:0000250 opercle opercle hypoplastic , abnormal
Show

 ZFA:0000561 parasphenoid parasphenoid ossified , abnormal
Show

 ZFA:0000694 ceratobranchial 5 tooth ceratobranchial 5 tooth hypoplastic , abnormal
Show

 ZFA:0000737 cranium cranium apoptotic process increased occurrence , abnormal
cranium necrotic , abnormal
Show

 ZFA:0001094 whole organism whole organism increased amount , abnormal
Show

 ZFA:0001114 head head decreased size , abnormal
Show

 ZFA:0001205 Meckel s cartilage Meckels cartilage decreased size , abnormal
Show

 ZFA:0001227 mandibular arch skeleton mandibular arch skeleton decreased size , abnormal
Show

 ZFA:0001306 pharyngeal arch pharyngeal arch neural crest cell spatial pattern , abnormal
pharyngeal arch neural crest cell decreased distribution , abnormal
pharyngeal arch hypoplastic , abnormal
Show

 ZFA:0001399 palatoquadrate cartilage palatoquadrate cartilage decreased size , abnormal
Show

 ZFA:0001400 ceratohyal cartilage ceratohyal cartilage polarity , abnormal
Show

 ZFA:0001405 ethmoid cartilage ethmoid cartilage hypoplastic , abnormal
Show

 ZFA:0001458 cranial cartilage cranial cartilage hypoplastic , abnormal
Show

 ZFA:0001516 ceratobranchial cartilage ceratobranchial cartilage decreased size , abnormal
Show

 ZFA:0001611 pharyngeal arch 2 pharyngeal arch 2 cell proliferation decreased occurrence , abnormal
pharyngeal arch 2 decreased size , abnormal
Show

 ZFA:0001612 pharyngeal arch 1 pharyngeal arch 1 cell proliferation decreased occurrence , abnormal
pharyngeal arch 1 decreased size , abnormal
Show

 ZFA:0009306 neuroepithelial cell neuroepithelial cell apoptotic , abnormal
Show

  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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