ENSMUSG00000029642


Mus musculus

Features
Gene ID: ENSMUSG00000029642
  
Biological name :Polr1d
  
Synonyms : P97304 / Polr1d / polymerase (RNA) I polypeptide D
  
Possible biological names infered from orthology : P0DPB5 / P0DPB6 / RNA polymerase I subunit D
  
Species: Mus musculus
  
Chr. number: 5
Strand: 1
Band: G3
Gene start: 147077050
Gene end: 147111597
  
Corresponding Affymetrix probe sets: 10503911 (MoGene1.0st)   10527559 (MoGene1.0st)   1447320_x_at (Mouse Genome 430 2.0 Array)   1448287_at (Mouse Genome 430 2.0 Array)   1451120_at (Mouse Genome 430 2.0 Array)   1459657_s_at (Mouse Genome 430 2.0 Array)   
  
Cross references: Ensembl peptide - ENSMUSP00000144185
Ensembl peptide - ENSMUSP00000144455
Ensembl peptide - ENSMUSP00000058355
Ensembl peptide - ENSMUSP00000106186
NCBI entrez gene - 20018     See in Manteia.
MGI - MGI:108403
RefSeq - NM_009087
RefSeq - NM_181730
RefSeq Peptide - NP_859419
RefSeq Peptide - NP_033113
swissprot - A0A0J9YV27
swissprot - Q9D1M1
swissprot - A0A0J9YUH6
swissprot - P97304
swissprot - Q545W2
Ensembl - ENSMUSG00000029642
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 polr1dENSDARG00000037570Danio rerio
 ENSGALG00000007470Gallus gallus
 P0DPB5ENSG00000186184Homo sapiens


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
No match


Protein motifs (from Interpro)
Interpro ID Name
 IPR008193  DNA-directed RNA polymerase Rpb11, 13-16kDa subunit, conserved site
 IPR009025  DNA-directed RNA polymerase, RBP11-like dimerisation domain
 IPR033898  DNA-directed RNA polymerases I and III subunit AC19
 IPR036603  RNA polymerase, RBP11-like subunit


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0000183 chromatin silencing at rDNA TAS
 biological_processGO:0006351 transcription, DNA-templated IEA
 biological_processGO:0006360 transcription by RNA polymerase I IEA
 biological_processGO:0006383 transcription by RNA polymerase III IEA
 cellular_componentGO:0005634 nucleus IEA
 cellular_componentGO:0005654 nucleoplasm TAS
 cellular_componentGO:0005666 DNA-directed RNA polymerase III complex IBA
 cellular_componentGO:0005736 DNA-directed RNA polymerase I complex IDA
 molecular_functionGO:0001054 RNA polymerase I activity IBA
 molecular_functionGO:0001056 RNA polymerase III activity IBA
 molecular_functionGO:0003677 DNA binding IEA
 molecular_functionGO:0003899 DNA-directed 5"-3" RNA polymerase activity IEA
 molecular_functionGO:0005515 protein binding IPI
 molecular_functionGO:0046983 protein dimerization activity IEA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

0 s.

 
External programs and data are copyrighted by and are the property of their respective authors.
The Manteia system, data and analyses are provided "as is" with no warranties, expressed or implied as to capabilities or accuracy. User assumes the entire risk as to the results and performance of the software, data and documentation


                   

© Olivier Tassy / Olivier Pourquie 2007-2024
contact: otassy@igbmc.fr