ENSDARG00000037930


Danio rerio

Features
Gene ID: ENSDARG00000037930
  
Biological name :rnf113a
  
Synonyms : ring finger protein 113A / rnf113a
  
Possible biological names infered from orthology : O15541 / Q8IZP6 / ring finger protein 113A1 / ring finger protein 113B / Rnf113a1 / Rnf113a2 / RNF113B
  
Species: Danio rerio
  
Chr. number: 3
Strand: -1
Band:
Gene start: 31919042
Gene end: 31924643
  
Corresponding Affymetrix probe sets: Dr.24115.1.S1_at (Zebrafish Array)   NM_001004536_at (Zebrafish Genome Array with custom cdf files)   
  
Cross references: Ensembl peptide - ENSDARP00000110509
NCBI entrez gene - 446116     See in Manteia.
RefSeq - NM_001004536
RefSeq Peptide - NP_001004536
swissprot - Q6DRF0
ZFIN ID - ZDB-GENE-040825-1
Ensembl - ENSDARG00000037930
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 RNF113AENSGALG00000000538Gallus gallus
 O15541ENSG00000125352Homo sapiens
 Q8IZP6ENSG00000139797Homo sapiens
 Rnf113a1ENSMUSG00000036537Mus musculus
 Rnf113a2ENSMUSG00000098134Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
No match


Protein motifs (from Interpro)
Interpro ID Name
 IPR000571  Zinc finger, CCCH-type
 IPR001841  Zinc finger, RING-type
 IPR013083  Zinc finger, RING/FYVE/PHD-type
 IPR017907  Zinc finger, RING-type, conserved site


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0034247 snoRNA splicing IBA
 biological_processGO:0045292 mRNA cis splicing, via spliceosome IBA
 cellular_componentGO:0005684 U2-type spliceosomal complex IBA
 molecular_functionGO:0046872 metal ion binding IEA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 ZFA:0000054 pericardium pericardium edematous , abnormal
Show

 ZFA:0000107 eye eye decreased size , abnormal
Show

 ZFA:0000112 gut gut quality , abnormal
gut hypoplastic , abnormal
Show

 ZFA:0000114 heart heart quality , abnormal
Show

 ZFA:0000123 liver liver quality , abnormal
liver hypoplastic , abnormal
Show

 ZFA:0001094 whole organism whole organism shape , abnormal
Show

 ZFA:0001114 head head decreased size , abnormal
head necrotic , abnormal
Show

 ZFA:0001115 trunk trunk decreased thickness , abnormal
trunk atrophied , abnormal
Show

 ZFA:0001439 anatomical system anatomical system quality , abnormal
Show

  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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contact: otassy@igbmc.fr