ENSG00000125352


Homo sapiens

Features
Gene ID: ENSG00000125352
  
Biological name :RNF113A
  
Synonyms : O15541 / ring finger protein 113A / RNF113A
  
Possible biological names infered from orthology :
  
Species: Homo sapiens
  
Chr. number: X
Strand: -1
Band: q24
Gene start: 119870475
Gene end: 119871827
  
Corresponding Affymetrix probe sets: 209565_at (Human Genome U133 Plus 2.0 Array)   
  
Cross references: Ensembl peptide - ENSP00000360497
NCBI entrez gene - 7737     See in Manteia.
OMIM - 300951
RefSeq - NM_006978
RefSeq Peptide - NP_008909
swissprot - O15541
Ensembl - ENSG00000125352
  
Related genetic diseases (OMIM): 300953 - ?Trichothiodystrophy 5, nonphotosensitive, 300953
See expression report in BioGPS
See gene description in Wikigenes
See gene description in GeneCards
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 rnf113aENSDARG00000037930Danio rerio
 RNF113AENSGALG00000000538Gallus gallus
 Rnf113a1ENSMUSG00000036537Mus musculus
 Rnf113a2ENSMUSG00000098134Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
Q8IZP6 / RNF113B / ring finger protein 113BENSG0000013979768


Protein motifs (from Interpro)
Interpro ID Name
 IPR000571  Zinc finger, CCCH-type
 IPR001841  Zinc finger, RING-type
 IPR013083  Zinc finger, RING/FYVE/PHD-type
 IPR017907  Zinc finger, RING-type, conserved site
 IPR036855  Zinc finger, CCCH-type superfamily


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0034247 snoRNA splicing IBA
 biological_processGO:0045292 mRNA cis splicing, via spliceosome IBA
 cellular_componentGO:0005684 U2-type spliceosomal complex IBA
 molecular_functionGO:0005515 protein binding IPI
 molecular_functionGO:0046872 metal ion binding IEA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 HP:0000054 Micropenis 
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 HP:0000154 Wide mouth "Abnormally wide mouth." [HPO:curators]
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 HP:0000253 Microcephaly, progressive "Progressive microcephaly is diagnosed when the head circumference falls progressively behind age- and gender-dependent norms." [HPO:curators]
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 HP:0000303 Mandibular prognathia "Abnormal prominence of the chin related to an abnormally long mandible." [HPO:curators]
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 HP:0000348 High forehead "An abnormally increased height of the forehead." [HPO:curators]
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 HP:0000556 Retinal dystrophy 
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 HP:0000609 Optic nerve hypoplasia 
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 HP:0000965 Cutis marmorata 
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 HP:0000992 Photosensitivity "An increased sensitivity of the skin to light. Photosensitivity may result in a rash upon exposure to the sun (which is known as photodermatosis). Photosensitivity can be diagnosed by phototests in which light is shone on small areas of skin." [HPO:curators]
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 HP:0001305 Dandy-Walker malformation "A congenital brain malformation typically characterized by incomplete formation of the cerebellar vermis, dilation of the fourth ventricle, and enlargement of the posterior fossa. In layman s terms, Dandy Walker malformation is a cyst in the cerebellum (typically symmetrical) that is involved with the fourth ventricle. This may interfere with the body s ability to drain cerebrospinal fluid from the brain, resulting in hydrocephalus. Dandy Walker cysts are formed during early embryonic development, while the brain forms. The cyst in the cerebellum typically has several blood vessels running through it connecting to the brain, thereby prohibiting surgical removal." [HPO:curators]
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 HP:0001321 Cerebellar hypoplasia 
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 HP:0001423 X-linked dominant inheritance "A mode of inheritance that is observed for dominant traits related to a gene encoded on the X chromosome. In the context of medical genetics, X-linked dominant disorders tend to manifest very severely in affected males. The severity of manifestation in females may depend on the degree of skewed X inactivation." [HPO:curators]
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 HP:0001511 Intrauterine growth retardation 
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 HP:0002028 Chronic diarrhea 
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 HP:0002187 Mental retardation, profound "Severe mental retardation is defined as an intelligence quotient (IQ) below 20." [HPO:curators]
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 HP:0002217 Slow-growing hair 
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 HP:0002283 Diffuse brain atrophy 
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 HP:0002299 Fine, brittle hair 
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 HP:0002719 Recurrent infections 
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 HP:0004313 Reduced immunoglobulin levels 
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 HP:0004322 Decreased body height "A height below that which is expected according to age and gender norms. Although there is no universally accepted definition of short stature, many refer to "short stature" as height more than 2 standard deviations below the mean for age and gender (or below the 3rd percentile for age and gender dependent norms)." [HPO:curators]
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 HP:0005328 Progeroid facial appearance 
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 HP:0006313 Widely spaced deciduous teeth 
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 HP:0008070 Sparse hair 
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Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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