ENSDARG00000038133


Danio rerio

Features
Gene ID: ENSDARG00000038133
  
Biological name :zgc:113411
  
Synonyms : zgc:113411
  
Possible biological names infered from orthology :
  
Species: Danio rerio
  
Chr. number: 3
Strand: 1
Band:
Gene start: 24640946
Gene end: 24649894
  
Corresponding Affymetrix probe sets:
  
Cross references: Ensembl peptide - ENSDARP00000152869
Ensembl peptide - ENSDARP00000055589
Ensembl peptide - ENSDARP00000110770
Ensembl peptide - ENSDARP00000111914
NCBI entrez gene - 550611     See in Manteia.
RefSeq - NM_001105120
RefSeq - NM_001017912
RefSeq Peptide - NP_001017912
RefSeq Peptide - NP_001098590
swissprot - F1QT05
swissprot - E9QFH0
ZFIN ID - ZDB-GENE-050417-474
Ensembl - ENSDARG00000038133
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
No match


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
sp100.3 / SP110 nuclear body protein, tandem duplicate 3 / SP110* / SP140* / SP100* / SP140L* / Q9H930* / O35892* / P23497* / Q13342* / Q8BVK9* / Q9HB58* / A630001G21Rik* / A530032D15Rik* /...ENSDARG0000009044928
sp100.1 / SP110 nuclear body protein, tandem duplicate 1 / SP110* / SP140* / SP100* / SP140L* / Q9H930* / O35892* / P23497* / Q13342* / Q8BVK9* / Q9HB58* / A630001G21Rik* / A530032D15Rik* /...ENSDARG0000005535928
sp100.2 / SP110 nuclear body protein, tandem duplicate 2 / SP110* / SP140* / SP100* / SP140L* / Q9H930* / O35892* / P23497* / Q13342* / Q8BVK9* / Q9HB58* / A630001G21Rik* / A530032D15Rik* /...ENSDARG0000010258820


Protein motifs (from Interpro)
Interpro ID Name
 IPR000770  SAND domain
 IPR001487  Bromodomain
 IPR001965  Zinc finger, PHD-type
 IPR010919  SAND-like domain superfamily
 IPR011011  Zinc finger, FYVE/PHD-type
 IPR013083  Zinc finger, RING/FYVE/PHD-type
 IPR019787  Zinc finger, PHD-finger


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0006355 regulation of transcription, DNA-templated IBA
 cellular_componentGO:0005634 nucleus IBA
 molecular_functionGO:0000977 RNA polymerase II regulatory region sequence-specific DNA binding IBA
 molecular_functionGO:0003677 DNA binding IEA
 molecular_functionGO:0003682 chromatin binding IBA
 molecular_functionGO:0003712 transcription coregulator activity IBA
 molecular_functionGO:0042393 histone binding IBA
 molecular_functionGO:0046872 metal ion binding IEA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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