ENSDARG00000055359


Danio rerio

Features
Gene ID: ENSDARG00000055359
  
Biological name :sp100.1
  
Synonyms : sp100.1 / SP110 nuclear body protein, tandem duplicate 1
  
Possible biological names infered from orthology : A530032D15Rik / A630001G21Rik / C130026I21Rik / nuclear antigen Sp100 / O35892 / P23497 / Q13342 / Q8BVK9 / Q9H930 / Q9HB58 / RIKEN cDNA A530032D15Rik gene / RIKEN cDNA A630001G21 gene / RIKEN cDNA C130026I21 gene / SP100 / SP100 nuclear antigen / SP110 / SP110 nuclear body protein / SP140 / SP140L / SP140 nuclear body protein / SP140 nuclear body protein like
  
Species: Danio rerio
  
Chr. number: 3
Strand: 1
Band:
Gene start: 24537023
Gene end: 24555259
  
Corresponding Affymetrix probe sets:
  
Cross references: Ensembl peptide - ENSDARP00000072168
NCBI entrez gene - 796843     See in Manteia.
RefSeq - XM_001337203
RefSeq - XM_021473609
swissprot - F1R6N2
ZFIN ID - ZDB-GENE-141212-239
Ensembl - ENSDARG00000055359
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 Q9H930ENSG00000185404Homo sapiens
 SP100ENSG00000067066Homo sapiens
 SP110ENSG00000135899Homo sapiens
 SP140ENSG00000079263Homo sapiens
 A530032D15RikENSMUSG00000089844Mus musculus
 A630001G21RikENSMUSG00000052760Mus musculus
 C130026I21RikENSMUSG00000052477Mus musculus
 Sp100ENSMUSG00000026222Mus musculus
 Sp110ENSMUSG00000070034Mus musculus
 Sp140ENSMUSG00000070031Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
sp100.3 / SP110 nuclear body protein, tandem duplicate 3 / SP110* / SP140* / SP100* / SP140L* / Q9H930* / O35892* / P23497* / Q13342* / Q8BVK9* / Q9HB58* / A630001G21Rik* / A530032D15Rik* /...ENSDARG0000009044957
sp100.2 / SP110 nuclear body protein, tandem duplicate 2 / SP110* / SP140* / SP100* / SP140L* / Q9H930* / O35892* / P23497* / Q13342* / Q8BVK9* / Q9HB58* / A630001G21Rik* / A530032D15Rik* /...ENSDARG0000010258846
zgc:113411ENSDARG0000003813319


Protein motifs (from Interpro)
Interpro ID Name
 IPR000770  SAND domain
 IPR001487  Bromodomain
 IPR001965  Zinc finger, PHD-type
 IPR004865  HSR domain
 IPR010919  SAND-like domain superfamily
 IPR011011  Zinc finger, FYVE/PHD-type
 IPR013083  Zinc finger, RING/FYVE/PHD-type
 IPR019787  Zinc finger, PHD-finger


Gene Ontology (GO)
TypeGO IDTermEv.Code
 cellular_componentGO:0005634 nucleus IEA
 molecular_functionGO:0003677 DNA binding IEA
 molecular_functionGO:0046872 metal ion binding IEA


Pathways (from Reactome)
Pathway description
SUMOylation of DNA damage response and repair proteins


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
 ENSDARG00000007438 ube2ib / Q9W6H5 / ubiquitin-conjugating enzyme E2Ib / UBE2I* / P63279* / ubiquitin conjugating enzyme E2 I*  / reaction
 ENSDARG00000044267 sumo1 / Q7SZR5 / small ubiquitin-like modifier 1 / P63166* / P63165* / Small ubiquitin-related modifier 1 *  / reaction / complex
 ENSDARG00000052649 Q9DDJ0 / ube2ia / ubiquitin-conjugating enzyme E2Ia / UBE2I* / P63280* / P63279* / ubiquitin conjugating enzyme E2 I*  / reaction
 ENSDARG00000102741 sumo2b / Q6DHL4 / small ubiquitin-like modifier 2b / SUMO4* / SUMO2* / Q6EEV6* / P61956* / P61957* / small ubiquitin-like modifier 4* / small ubiquitin-like modifier 2*  / reaction






 

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