ENSMUSG00000070031


Mus musculus

Features
Gene ID: ENSMUSG00000070031
  
Biological name :Sp140
  
Synonyms : Sp140 / Sp140 nuclear body protein
  
Possible biological names infered from orthology : Q13342
  
Species: Mus musculus
  
Chr. number: 1
Strand: 1
Band: C5
Gene start: 85600378
Gene end: 85645037
  
Corresponding Affymetrix probe sets: 10347933 (MoGene1.0st)   10582862 (MoGene1.0st)   
  
Cross references: Ensembl peptide - ENSMUSP00000125026
Ensembl peptide - ENSMUSP00000079095
Ensembl peptide - ENSMUSP00000109012
Ensembl peptide - ENSMUSP00000123756
NCBI entrez gene - 434484     See in Manteia.
MGI - MGI:3702467
RefSeq - XM_017321620
RefSeq - XM_017321617
RefSeq - XM_017321619
RefSeq - XM_017321615
RefSeq - XM_017321613
RefSeq - NM_001013817
RefSeq Peptide - NP_001013839
swissprot - Q6NSQ5
swissprot - F7DFN7
swissprot - D3Z054
swissprot - F6V9G0
Ensembl - ENSMUSG00000070031
  

This gene has been taged as a transcription factor by TFT
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 sp100.1ENSDARG00000055359Danio rerio
 sp100.2ENSDARG00000102588Danio rerio
 sp100.3ENSDARG00000090449Danio rerio
 SP140ENSG00000079263Homo sapiens


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
C130026I21Rik / RIKEN cDNA C130026I21 gene / SP140* / Q13342* / SP140 nuclear body protein*ENSMUSG0000005247727
Sp100 / O35892 / nuclear antigen Sp100 / Q9H930* / P23497* / SP140L* / SP100 nuclear antigen* / SP140 nuclear body protein like*ENSMUSG0000002622227
A530032D15Rik / RIKEN cDNA A530032D15Rik gene / SP140* / Q13342* / SP140 nuclear body protein*ENSMUSG0000008984425
Sp110 / Q8BVK9 / Sp110 nuclear body protein / Q9HB58*ENSMUSG0000007003418
A630001G21Rik / RIKEN cDNA A630001G21 geneENSMUSG0000005276010


Protein motifs (from Interpro)
Interpro ID Name
 IPR000770  SAND domain
 IPR001487  Bromodomain
 IPR001965  Zinc finger, PHD-type
 IPR004865  HSR domain
 IPR010919  SAND-like domain superfamily
 IPR011011  Zinc finger, FYVE/PHD-type
 IPR013083  Zinc finger, RING/FYVE/PHD-type
 IPR019786  Zinc finger, PHD-type, conserved site
 IPR019787  Zinc finger, PHD-finger
 IPR030411  Nuclear body protein SP140
 IPR036427  Bromodomain-like superfamily


Gene Ontology (GO)
TypeGO IDTermEv.Code
 cellular_componentGO:0001650 fibrillar center ISO
 cellular_componentGO:0005634 nucleus IEA
 cellular_componentGO:0005739 mitochondrion ISO
 cellular_componentGO:0016604 nuclear body IEA
 molecular_functionGO:0003677 DNA binding IEA
 molecular_functionGO:0005515 protein binding IEA
 molecular_functionGO:0046872 metal ion binding IEA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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