ENSG00000079263


Homo sapiens

Features
Gene ID: ENSG00000079263
  
Biological name :SP140
  
Synonyms : Q13342 / SP140 / SP140 nuclear body protein
  
Possible biological names infered from orthology :
  
Species: Homo sapiens
  
Chr. number: 2
Strand: 1
Band: q37.1
Gene start: 230203110
Gene end: 230313215
  
Corresponding Affymetrix probe sets: 1565588_at (Human Genome U133 Plus 2.0 Array)   207777_s_at (Human Genome U133 Plus 2.0 Array)   
  
Cross references: Ensembl peptide - ENSP00000475284
Ensembl peptide - ENSP00000342096
Ensembl peptide - ENSP00000362749
Ensembl peptide - ENSP00000375899
Ensembl peptide - ENSP00000393618
Ensembl peptide - ENSP00000398210
NCBI entrez gene - 11262     See in Manteia.
OMIM - 608602
RefSeq - XM_017003253
RefSeq - NM_001005176
RefSeq - NM_001278451
RefSeq - NM_001278452
RefSeq - NM_001278453
RefSeq - NM_007237
RefSeq - XM_017003246
RefSeq - XM_017003247
RefSeq - XM_017003248
RefSeq - XM_017003249
RefSeq - XM_017003250
RefSeq - XM_017003251
RefSeq - XM_017003252
RefSeq - XM_005246252
RefSeq - XM_005246253
RefSeq - XM_005246254
RefSeq - XM_005246255
RefSeq - XM_005246256
RefSeq - XM_006712223
RefSeq - XM_011510515
RefSeq - XM_011510516
RefSeq - XM_011510517
RefSeq - XM_011510518
RefSeq - XM_011510519
RefSeq - XM_011510520
RefSeq - XM_017003239
RefSeq - XM_017003240
RefSeq - XM_017003241
RefSeq - XM_017003242
RefSeq - XM_017003243
RefSeq - XM_017003244
RefSeq - XM_017003245
RefSeq Peptide - NP_009168
RefSeq Peptide - NP_001265381
RefSeq Peptide - NP_001265382
RefSeq Peptide - NP_001265380
RefSeq Peptide - NP_001005176
swissprot - U3KPV9
swissprot - Q13342
Ensembl - ENSG00000079263
  

This gene has been taged as a transcription factor by TFT
See expression report in BioGPS
See gene description in Wikigenes
See gene description in GeneCards
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 sp100.1ENSDARG00000055359Danio rerio
 sp100.2ENSDARG00000102588Danio rerio
 sp100.3ENSDARG00000090449Danio rerio
 A530032D15RikENSMUSG00000089844Mus musculus
 C130026I21RikENSMUSG00000052477Mus musculus
 Sp140ENSMUSG00000070031Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
Q9H930 / SP140L / SP140 nuclear body protein likeENSG0000018540450
SP100 / P23497 / SP100 nuclear antigenENSG0000006706635
SP110 / Q9HB58 / SP110 nuclear body proteinENSG0000013589926


Protein motifs (from Interpro)
Interpro ID Name
 IPR000770  SAND domain
 IPR001487  Bromodomain
 IPR001965  Zinc finger, PHD-type
 IPR004865  HSR domain
 IPR010919  SAND-like domain superfamily
 IPR011011  Zinc finger, FYVE/PHD-type
 IPR013083  Zinc finger, RING/FYVE/PHD-type
 IPR019786  Zinc finger, PHD-type, conserved site
 IPR019787  Zinc finger, PHD-finger
 IPR030411  Nuclear body protein SP140
 IPR036427  Bromodomain-like superfamily


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0006355 regulation of transcription, DNA-templated IEA
 biological_processGO:0006952 defense response TAS
 cellular_componentGO:0001650 fibrillar center IDA
 cellular_componentGO:0005634 nucleus TAS
 cellular_componentGO:0005635 nuclear envelope TAS
 cellular_componentGO:0005654 nucleoplasm TAS
 cellular_componentGO:0005737 cytoplasm IEA
 cellular_componentGO:0005739 mitochondrion IDA
 cellular_componentGO:0016604 nuclear body IEA
 cellular_componentGO:0016605 PML body IEA
 molecular_functionGO:0003677 DNA binding IEA
 molecular_functionGO:0003700 DNA-binding transcription factor activity TAS
 molecular_functionGO:0005515 protein binding IPI
 molecular_functionGO:0046872 metal ion binding IEA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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