ENSG00000185404


Homo sapiens

Features
Gene ID: ENSG00000185404
  
Biological name :SP140L
  
Synonyms : Q9H930 / SP140L / SP140 nuclear body protein like
  
Possible biological names infered from orthology :
  
Species: Homo sapiens
  
Chr. number: 2
Strand: 1
Band: q37.1
Gene start: 230327184
Gene end: 230403732
  
Corresponding Affymetrix probe sets: 1565588_at (Human Genome U133 Plus 2.0 Array)   214791_at (Human Genome U133 Plus 2.0 Array)   223934_at (Human Genome U133 Plus 2.0 Array)   
  
Cross references: Ensembl peptide - ENSP00000379811
Ensembl peptide - ENSP00000395223
Ensembl peptide - ENSP00000397911
Ensembl peptide - ENSP00000243810
Ensembl peptide - ENSP00000395195
NCBI entrez gene - 93349     See in Manteia.
OMIM - 617747
RefSeq - XM_017005301
RefSeq - NM_001308162
RefSeq - NM_001308163
RefSeq - NM_001352893
RefSeq - NM_138402
RefSeq - XM_017005294
RefSeq - XM_017005295
RefSeq - XM_017005296
RefSeq - XM_017005297
RefSeq - XM_017005298
RefSeq - XM_017005299
RefSeq - XM_017005300
RefSeq - XM_006712855
RefSeq - XM_006712856
RefSeq - XM_006712858
RefSeq - XM_011512190
RefSeq - XM_011512191
RefSeq Peptide - NP_001295091
RefSeq Peptide - NP_001295092
RefSeq Peptide - NP_001339822
RefSeq Peptide - NP_612411
swissprot - Q9H930
swissprot - U5Y3L1
swissprot - H7BYP4
Ensembl - ENSG00000185404
  

This gene has been taged as a transcription factor by TFT
See expression report in BioGPS
See gene description in Wikigenes
See gene description in GeneCards
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 sp100.1ENSDARG00000055359Danio rerio
 sp100.2ENSDARG00000102588Danio rerio
 sp100.3ENSDARG00000090449Danio rerio
 Sp100ENSMUSG00000026222Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
SP140 / Q13342 / SP140 nuclear body proteinENSG0000007926374
SP100 / P23497 / SP100 nuclear antigenENSG0000006706657
SP110 / Q9HB58 / SP110 nuclear body proteinENSG0000013589936


Protein motifs (from Interpro)
Interpro ID Name
 IPR000770  SAND domain
 IPR001487  Bromodomain
 IPR001965  Zinc finger, PHD-type
 IPR004865  HSR domain
 IPR010919  SAND-like domain superfamily
 IPR011011  Zinc finger, FYVE/PHD-type
 IPR013083  Zinc finger, RING/FYVE/PHD-type
 IPR019786  Zinc finger, PHD-type, conserved site
 IPR019787  Zinc finger, PHD-finger
 IPR030411  Nuclear body protein SP140
 IPR036427  Bromodomain-like superfamily


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0006357 regulation of transcription by RNA polymerase II IEA
 cellular_componentGO:0005634 nucleus IEA
 cellular_componentGO:0016604 nuclear body IEA
 molecular_functionGO:0000981 RNA polymerase II transcription factor activity, sequence-specific DNA binding ISM
 molecular_functionGO:0003677 DNA binding IEA
 molecular_functionGO:0005515 protein binding IEA
 molecular_functionGO:0046872 metal ion binding IEA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

1 s.

 
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