ENSDARG00000038785


Danio rerio

Features
Gene ID: ENSDARG00000038785
  
Biological name :abcf2a
  
Synonyms : abcf2a / ATP-binding cassette, sub-family F (GCN20), member 2a
  
Possible biological names infered from orthology : ABCF2 / ATP-binding cassette, sub-family F (GCN20), member 2 / ATP binding cassette subfamily F member 2 / Q99LE6 / Q9UG63
  
Species: Danio rerio
  
Chr. number: 2
Strand: -1
Band:
Gene start: 32505554
Gene end: 32513538
  
Corresponding Affymetrix probe sets: Dr.24208.1.S1_at (Zebrafish Array)   NM_201315_at (Zebrafish Genome Array with custom cdf files)   
  
Cross references: Ensembl peptide - ENSDARP00000056639
Ensembl peptide - ENSDARP00000132115
NCBI entrez gene - 336770     See in Manteia.
RefSeq - NM_201315
RefSeq Peptide - NP_958472
swissprot - F1QZ64
swissprot - A0A0R4IBA2
ZFIN ID - ZDB-GENE-030131-8714
Ensembl - ENSDARG00000038785
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 ABCF2ENSGALG00000034573Gallus gallus
 ABCF2ENSG00000033050Homo sapiens
 ABCF2ENSG00000285292Homo sapiens
 Abcf2ENSMUSG00000028953Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
abcf2b / ATP-binding cassette, sub-family F (GCN20), member 2b / ABCF2* / Q9UG63* / Q99LE6* / ATP binding cassette subfamily F member 2* / ATP-binding cassette, sub-family F (GCN20), member 2*ENSDARG0000005233191


Protein motifs (from Interpro)
Interpro ID Name
 IPR003439  ABC transporter-like
 IPR003593  AAA+ ATPase domain
 IPR017871  ABC transporter, conserved site
 IPR027417  P-loop containing nucleoside triphosphate hydrolase
 IPR032781  ABC-transporter extension domain


Gene Ontology (GO)
TypeGO IDTermEv.Code
 molecular_functionGO:0000166 nucleotide binding IEA
 molecular_functionGO:0005524 ATP binding IEA
 molecular_functionGO:0016887 ATPase activity IEA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

0 s.

 
External programs and data are copyrighted by and are the property of their respective authors.
The Manteia system, data and analyses are provided "as is" with no warranties, expressed or implied as to capabilities or accuracy. User assumes the entire risk as to the results and performance of the software, data and documentation


                   

© Olivier Tassy / Olivier Pourquie 2007-2024
contact: otassy@igbmc.fr