ENSDARG00000038879


Danio rerio

Features
Gene ID: ENSDARG00000038879
  
Biological name :ift80
  
Synonyms : ift80 / intraflagellar transport 80 homolog (Chlamydomonas)
  
Possible biological names infered from orthology : AC079594.2 / Intraflagellar transport / intraflagellar transport 80 / Q8K057 / Q9P2H3
  
Species: Danio rerio
  
Chr. number: 15
Strand: -1
Band:
Gene start: 1494493
Gene end: 1534258
  
Corresponding Affymetrix probe sets: Dr.6138.1.A1_at (Zebrafish Array)   NM_001008625_at (Zebrafish Genome Array with custom cdf files)   
  
Cross references: Ensembl peptide - ENSDARP00000056762
Ensembl peptide - ENSDARP00000116409
NCBI entrez gene - 494082     See in Manteia.
RefSeq - NM_001008625
RefSeq - XM_005173351
RefSeq Peptide - NP_001008625
swissprot - F1QXI6
ZFIN ID - ZDB-GENE-041212-50
Ensembl - ENSDARG00000038879
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 ENSGALG00000009559Gallus gallus
 AC079594.2ENSG00000248710Homo sapiens
 IFT80ENSG00000068885Homo sapiens
 Ift80ENSMUSG00000027778Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
No match


Protein motifs (from Interpro)
Interpro ID Name
 IPR001680  WD40 repeat
 IPR015943  WD40/YVTN repeat-like-containing domain superfamily
 IPR017986  WD40-repeat-containing domain


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0008104 protein localization IMP
 biological_processGO:0060026 convergent extension IGI
 biological_processGO:0060042 retina morphogenesis in camera-type eye IMP
 biological_processGO:0060271 cilium assembly IMP
 cellular_componentGO:0005813 centrosome IBA
 cellular_componentGO:0005929 cilium IBA
 cellular_componentGO:0030992 intraciliary transport particle B IBA
 molecular_functionGO:0003674 molecular_function ND


Pathways (from Reactome)
Pathway description
Intraflagellar transport


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 ZFA:0000054 pericardium pericardium edematous , abnormal
Show

 ZFA:0000107 eye eye disorganized , abnormal
eye decreased size , abnormal
Show

 ZFA:0000114 heart heart edematous , abnormal
Show

 ZFA:0000143 retinal photoreceptor layer retinal photoreceptor layer disorganized , abnormal
retinal photoreceptor layer retinal cone cell disheveled , abnormal
Show

 ZFA:0000150 pronephric duct pronephric duct dilated , abnormal
pronephric duct cilium decreased length , abnormal
pronephric duct cilium decreased amount , abnormal
Show

 ZFA:0000151 pronephros pronephros cystic , abnormal
Show

 ZFA:0000217 inner ear inner ear kinocilium decreased length , abnormal
Show

 ZFA:0000529 kidney kidney cystic , abnormal
Show

 ZFA:0000578 ceratohyal bone ceratohyal bone shape , abnormal
Show

 ZFA:0001094 whole organism whole organism curved ventral , abnormal
whole organism anterior-posterior axis decreased length , abnormal
Show

 ZFA:0001117 post-vent region post-vent region increased curvature , abnormal
Show

 ZFA:0001205 Meckel s cartilage Meckels cartilage hypoplastic , abnormal
Show

 ZFA:0001424 chondrocranium chondrocranium morphology , abnormal
Show

 ZFA:0001465 photoreceptor inner segment layer photoreceptor inner segment layer nucleus condensed , abnormal
Show

 ZFA:0001466 photoreceptor outer segment layer photoreceptor outer segment layer nucleus condensed , abnormal
photoreceptor outer segment layer malformed , abnormal
photoreceptor outer segment layer disorganized , abnormal
photoreceptor outer segment layer photoreceptor outer segment membrane disorganized , abnormal
photoreceptor outer segment layer cell decreased amount , abnormal
Show

 ZFA:0001507 trabecula cranii trabecula cranii fused with trabecula cranii , abnormal
Show

 ZFA:0001508 trabecula communis trabecula communis aplastic , abnormal
Show

 ZFA:0009127 photoreceptor cell photoreceptor cell degeneration , abnormal
Show

  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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