ENSDARG00000039082


Danio rerio

Features
Gene ID: ENSDARG00000039082
  
Biological name :zgc:123010
  
Synonyms : zgc:123010
  
Possible biological names infered from orthology :
  
Species: Danio rerio
  
Chr. number: 13
Strand: -1
Band:
Gene start: 40247379
Gene end: 40282770
  
Corresponding Affymetrix probe sets: Dr.13298.1.S1_at (Zebrafish Array)   Dr.9003.1.A1_at (Zebrafish Array)   
  
Cross references: Ensembl peptide - ENSDARP00000113359
NCBI entrez gene - 641500     See in Manteia.
RefSeq - XM_009307531
RefSeq - XM_009307532
RefSeq - NM_001145554
RefSeq - XM_005169515
RefSeq Peptide - NP_001139026
swissprot - B8JL34
ZFIN ID - ZDB-GENE-051120-15
Ensembl - ENSDARG00000039082
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
No match


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
si:dkey-33c12.4 / TTC31* / Q49AM3* / tetratricopeptide repeat domain 31*ENSDARG0000005789024
stip1 / stress-induced phosphoprotein 1 / P31948* / Q60864*ENSDARG0000000490618


Protein motifs (from Interpro)
Interpro ID Name
 IPR000504  RNA recognition motif domain
 IPR000571  Zinc finger, CCCH-type
 IPR011990  Tetratricopeptide-like helical domain superfamily
 IPR013026  Tetratricopeptide repeat-containing domain
 IPR013105  Tetratricopeptide repeat 2
 IPR019734  Tetratricopeptide repeat


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0008150 biological_process ND
 cellular_componentGO:0005575 cellular_component ND
 molecular_functionGO:0003676 nucleic acid binding IEA
 molecular_functionGO:0003723 RNA binding IEA
 molecular_functionGO:0046872 metal ion binding IEA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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contact: otassy@igbmc.fr