ENSDARG00000039302


Danio rerio

Features
Gene ID: ENSDARG00000039302
  
Biological name :terfa
  
Synonyms : telomeric repeat binding factor a / terfa
  
Possible biological names infered from orthology : O35144 / Q15554 / telomeric repeat binding factor 2 / TERF2
  
Species: Danio rerio
  
Chr. number: 4
Strand: 1
Band:
Gene start: 77973876
Gene end: 77996958
  
Corresponding Affymetrix probe sets: Dr.25264.1.S1_at (Zebrafish Array)   NM_173243_at (Zebrafish Genome Array with custom cdf files)   
  
Cross references: Ensembl peptide - ENSDARP00000105024
Ensembl peptide - ENSDARP00000143229
Ensembl peptide - ENSDARP00000143188
Ensembl peptide - ENSDARP00000143123
Ensembl peptide - ENSDARP00000057422
NCBI entrez gene - 192316     See in Manteia.
RefSeq - NM_173243
RefSeq - XM_009301105
RefSeq Peptide - NP_775350
swissprot - F1QRC8
swissprot - A0A1L1QZU9
swissprot - A0A1L1QZR6
swissprot - A0A1L1QZK0
ZFIN ID - ZDB-GENE-020419-38
Ensembl - ENSDARG00000039302
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 TERF2ENSGALG00000000657Gallus gallus
 TERF2ENSG00000132604Homo sapiens
 Terf2ENSMUSG00000031921Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
terf1 / telomeric repeat binding factor (NIMA-interacting) 1 / P54274* / P70371* / telomeric repeat binding factor 1*ENSDARG0000005871012


Protein motifs (from Interpro)
Interpro ID Name
 IPR001005  SANT/Myb domain
 IPR009057  Homeobox-like domain superfamily
 IPR013867  Telomere repeat-binding factor, dimerisation domain
 IPR017930  Myb domain
 IPR030657  Telomeric repeat-binding factor 2


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0000723 telomere maintenance IEA
 biological_processGO:0031848 protection from non-homologous end joining at telomere IEA
 cellular_componentGO:0000784 nuclear chromosome, telomeric region IEA
 cellular_componentGO:0005634 nucleus IEA
 molecular_functionGO:0003677 DNA binding IEA
 molecular_functionGO:0042162 telomeric DNA binding IEA
 molecular_functionGO:0042803 protein homodimerization activity IEA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 ZFA:0000008 brain brain necrotic , abnormal
brain degenerate , abnormal
Show

 ZFA:0000012 central nervous system central nervous system necrotic , abnormal
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 ZFA:0000075 spinal cord spinal cord degenerate , abnormal
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 ZFA:0000107 eye eye decreased size , abnormal
Show

 ZFA:0000119 retinal inner nuclear layer retinal inner nuclear layer structure , abnormal
Show

 ZFA:0000143 retinal photoreceptor layer retinal photoreceptor layer decreased thickness , abnormal
Show

 ZFA:0000144 retinal pigmented epithelium retinal pigmented epithelium structure , abnormal
Show

 ZFA:0000152 retina retina decreased thickness , abnormal
retina disorganized , abnormal
retina degenerate , abnormal
Show

 ZFA:0001094 whole organism whole organism viability , abnormal
Show

 ZFA:0001114 head head decreased size , abnormal
Show

 ZFA:0001227 mandibular arch skeleton mandibular arch skeleton protruding , abnormal
Show

 ZFA:0001329 retinal inner plexiform layer retinal inner plexiform layer decreased thickness , abnormal
Show

  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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