ENSDARG00000039347


Danio rerio

Features
Gene ID: ENSDARG00000039347
  
Biological name :rps24
  
Synonyms : ribosomal protein S24 / rps24
  
Possible biological names infered from orthology : P62847 / P62849
  
Species: Danio rerio
  
Chr. number: 13
Strand: 1
Band:
Gene start: 30225262
Gene end: 30235220
  
Corresponding Affymetrix probe sets: Dr.20167.2.S1_a_at (Zebrafish Array)   
  
Cross references: Ensembl peptide - ENSDARP00000113267
Ensembl peptide - ENSDARP00000121784
Ensembl peptide - ENSDARP00000115960
Ensembl peptide - ENSDARP00000091586
NCBI entrez gene - 394194     See in Manteia.
RefSeq - XM_005156807
RefSeq - XM_021480547
swissprot - B7ZD34
swissprot - B7ZD32
swissprot - Q642J7
ZFIN ID - ZDB-GENE-040109-5
Ensembl - ENSDARG00000039347
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 RPS24ENSGALG00000004871Gallus gallus
 RPS24ENSG00000138326Homo sapiens
 Rps24ENSMUSG00000025290Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
No match


Protein motifs (from Interpro)
Interpro ID Name
 IPR001976  Ribosomal protein S24e
 IPR012678  Ribosomal protein L23/L15e core domain superfamily
 IPR018098  Ribosomal S24e conserved site


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0000462 maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) IBA
 biological_processGO:0006412 translation IEA
 biological_processGO:0060215 primitive hemopoiesis IMP
 biological_processGO:0060216 definitive hemopoiesis IMP
 cellular_componentGO:0005622 intracellular IEA
 cellular_componentGO:0005840 ribosome IEA
 cellular_componentGO:0022627 cytosolic small ribosomal subunit IBA
 molecular_functionGO:0003735 structural constituent of ribosome IEA


Pathways (from Reactome)
Pathway description
L13a-mediated translational silencing of Ceruloplasmin expression
SRP-dependent cotranslational protein targeting to membrane
Major pathway of rRNA processing in the nucleolus and cytosol
Translation initiation complex formation
Formation of a pool of free 40S subunits
Formation of the ternary complex, and subsequently, the 43S complex
Ribosomal scanning and start codon recognition
GTP hydrolysis and joining of the 60S ribosomal subunit
Nonsense Mediated Decay (NMD) independent of the Exon Junction Complex (EJC)
Nonsense Mediated Decay (NMD) enhanced by the Exon Junction Complex (EJC)


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 ZFA:0009256 nucleate erythrocyte nucleate erythrocyte decreased amount , abnormal
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Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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