ENSDARG00000039882


Danio rerio

Features
Gene ID: ENSDARG00000039882
  
Biological name :ap3s2
  
Synonyms : adaptor-related protein complex 3, sigma 2 subunit / ap3s2
  
Possible biological names infered from orthology : AP-3 complex subunit sigma-2 / P59780 / Q8BSZ2
  
Species: Danio rerio
  
Chr. number: 25
Strand: 1
Band:
Gene start: 10762016
Gene end: 10803532
  
Corresponding Affymetrix probe sets: Dr.18325.1.S1_at (Zebrafish Array)   NM_001002539_at (Zebrafish Genome Array with custom cdf files)   
  
Cross references: Ensembl peptide - ENSDARP00000058338
Ensembl peptide - ENSDARP00000117147
Ensembl peptide - ENSDARP00000112771
NCBI entrez gene - 436812     See in Manteia.
RefSeq - NM_001002539
RefSeq Peptide - NP_001002539
swissprot - E9QIJ3
swissprot - E9QEP8
swissprot - Q6DGS0
ZFIN ID - ZDB-GENE-040718-274
Ensembl - ENSDARG00000039882
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 AP3S2ENSGALG00000008291Gallus gallus
 AP3S2ENSG00000157823Homo sapiens
 Ap3s2ENSMUSG00000063801Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
No match


Protein motifs (from Interpro)
Interpro ID Name
 IPR000804  Clathrin adaptor complex, small chain
 IPR011012  Longin-like domain superfamily
 IPR016635  Adaptor protein complex, sigma subunit
 IPR022775  AP complex, mu/sigma subunit


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0006886 intracellular protein transport IEA
 biological_processGO:0015031 protein transport IEA
 biological_processGO:0016192 vesicle-mediated transport IEA
 cellular_componentGO:0016020 membrane IEA
 cellular_componentGO:0030117 membrane coat IEA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 ZFA:0000029 hindbrain hindbrain distended , abnormal
Show

 ZFA:0000135 notochord notochord kinked , abnormal
Show

 ZFA:0009091 melanocyte melanocyte decreased pigmentation , abnormal
Show

  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

0 s.

 
External programs and data are copyrighted by and are the property of their respective authors.
The Manteia system, data and analyses are provided "as is" with no warranties, expressed or implied as to capabilities or accuracy. User assumes the entire risk as to the results and performance of the software, data and documentation


                   

© Olivier Tassy / Olivier Pourquie 2007-2024
contact: otassy@igbmc.fr