ENSDARG00000040440


Danio rerio

Features
Gene ID: ENSDARG00000040440
  
Biological name :snrpd2
  
Synonyms : small nuclear ribonucleoprotein D2 polypeptide / snrpd2
  
Possible biological names infered from orthology : P62316 / P62317 / small nuclear ribonucleoprotein D2
  
Species: Danio rerio
  
Chr. number: 18
Strand: -1
Band:
Gene start: 40875873
Gene end: 40884087
  
Corresponding Affymetrix probe sets: Dr.12513.1.S1_at (Zebrafish Array)   
  
Cross references: Ensembl peptide - ENSDARP00000059193
NCBI entrez gene - 550244     See in Manteia.
RefSeq - NM_001017582
RefSeq Peptide - NP_001017582
swissprot - Q567V5
ZFIN ID - ZDB-GENE-040914-10
Ensembl - ENSDARG00000040440
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 P62316ENSG00000125743Homo sapiens
 P62317ENSMUSG00000040824Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
No match


Protein motifs (from Interpro)
Interpro ID Name
 IPR001163  LSM domain, eukaryotic/archaea-type
 IPR010920  LSM domain superfamily
 IPR027248  Small nuclear ribonucleoprotein Sm D2


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0000387 spliceosomal snRNP assembly IBA
 biological_processGO:0008380 RNA splicing IEA
 cellular_componentGO:0005682 U5 snRNP IBA
 cellular_componentGO:0005685 U1 snRNP IBA
 cellular_componentGO:0005686 U2 snRNP IBA
 cellular_componentGO:0030532 small nuclear ribonucleoprotein complex IEA
 cellular_componentGO:0046540 U4/U6 x U5 tri-snRNP complex IBA
 cellular_componentGO:0071011 precatalytic spliceosome IBA
 cellular_componentGO:0071013 catalytic step 2 spliceosome IBA


Pathways (from Reactome)
Pathway description
snRNP Assembly
mRNA Splicing - Major Pathway
mRNA Splicing - Minor Pathway


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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