ENSMUSG00000040824


Mus musculus

Features
Gene ID: ENSMUSG00000040824
  
Biological name :Snrpd2
  
Synonyms : P62317 / small nuclear ribonucleoprotein D2 / Snrpd2
  
Possible biological names infered from orthology : P62316 / small nuclear ribonucleoprotein D2 polypeptide
  
Species: Mus musculus
  
Chr. number: 7
Strand: 1
Band: A3
Gene start: 19149722
Gene end: 19153542
  
Corresponding Affymetrix probe sets: 10367073 (MoGene1.0st)   10405234 (MoGene1.0st)   10424250 (MoGene1.0st)   10498595 (MoGene1.0st)   10550601 (MoGene1.0st)   1452680_at (Mouse Genome 430 2.0 Array)   
  
Cross references: Ensembl peptide - ENSMUSP00000037597
NCBI entrez gene - 107686     See in Manteia.
MGI - MGI:98345
RefSeq - NM_026943
RefSeq Peptide - NP_081219
swissprot - P62317
swissprot - Q14AF6
Ensembl - ENSMUSG00000040824
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 snrpd2ENSDARG00000040440Danio rerio
 P62316ENSG00000125743Homo sapiens


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
No match


Protein motifs (from Interpro)
Interpro ID Name
 IPR001163  LSM domain, eukaryotic/archaea-type
 IPR010920  LSM domain superfamily
 IPR027248  Small nuclear ribonucleoprotein Sm D2


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0000387 spliceosomal snRNP assembly IEA
 biological_processGO:0006397 mRNA processing IEA
 biological_processGO:0008380 RNA splicing IEA
 cellular_componentGO:0005634 nucleus IEA
 cellular_componentGO:0005681 spliceosomal complex IEA
 cellular_componentGO:0005682 U5 snRNP IBA
 cellular_componentGO:0005685 U1 snRNP IEA
 cellular_componentGO:0005686 U2 snRNP IBA
 cellular_componentGO:0005687 U4 snRNP IEA
 cellular_componentGO:0005689 U12-type spliceosomal complex IEA
 cellular_componentGO:0005737 cytoplasm IEA
 cellular_componentGO:0005829 cytosol ISS
 cellular_componentGO:0030532 small nuclear ribonucleoprotein complex IEA
 cellular_componentGO:0034709 methylosome IEA
 cellular_componentGO:0034715 pICln-Sm protein complex IEA
 cellular_componentGO:0034719 SMN-Sm protein complex IEA
 cellular_componentGO:0046540 U4/U6 x U5 tri-snRNP complex IBA
 cellular_componentGO:0071007 U2-type catalytic step 2 spliceosome IEA
 cellular_componentGO:0071011 precatalytic spliceosome IBA
 cellular_componentGO:0071013 catalytic step 2 spliceosome IEA
 molecular_functionGO:0005515 protein binding IPI


Pathways (from Reactome)
Pathway description
snRNP Assembly
mRNA Splicing - Major Pathway
mRNA Splicing - Minor Pathway


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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