ENSDARG00000040725


Danio rerio

Features
Gene ID: ENSDARG00000040725
  
Biological name :zgc:114130
  
Synonyms : zgc:114130
  
Possible biological names infered from orthology :
  
Species: Danio rerio
  
Chr. number: 15
Strand: -1
Band:
Gene start: 14034254
Gene end: 14038227
  
Corresponding Affymetrix probe sets: Dr.20261.3.A1_at (Zebrafish Array)   NM_001030247_at (Zebrafish Genome Array with custom cdf files)   
  
Cross references: Ensembl peptide - ENSDARP00000122199
NCBI entrez gene - 570332     See in Manteia.
RefSeq - NM_001030247
RefSeq - XM_005173384
RefSeq Peptide - NP_001025418
swissprot - F1QH59
ZFIN ID - ZDB-GENE-050913-48
Ensembl - ENSDARG00000040725
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
No match


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
zfp36l1a / zinc finger protein 36, C3H type-like 1a / Q07352* / P23950* / ZFP36L1* / ZFP36 ring finger protein like 1* / zinc finger protein 36, C3H type-like 1*ENSDARG0000001615431
zfp36l1b / zinc finger protein 36, C3H type-like 1b / Q07352* / P23950* / ZFP36L1* / ZFP36 ring finger protein like 1* / zinc finger protein 36, C3H type-like 1*ENSDARG0000002144329
sb:cb81ENSDARG0000004050329
zfp36l2 / zinc finger protein 36, C3H type-like 2 / P23949* / P47974* / ZFP36 ring finger protein like 2*ENSDARG0000002180627
zgc:162730 / ZFP36* / ZFP36 ring finger protein*ENSDARG0000010372025
cth1 / cysteine three histidine 1ENSDARG0000005732815


Protein motifs (from Interpro)
Interpro ID Name
 IPR000571  Zinc finger, CCCH-type


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0061158 3"-UTR-mediated mRNA destabilization IBA
 cellular_componentGO:0005829 cytosol IBA
 molecular_functionGO:0003730 mRNA 3"-UTR binding IBA
 molecular_functionGO:0046872 metal ion binding IEA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

1 s.

 
External programs and data are copyrighted by and are the property of their respective authors.
The Manteia system, data and analyses are provided "as is" with no warranties, expressed or implied as to capabilities or accuracy. User assumes the entire risk as to the results and performance of the software, data and documentation


                   

© Olivier Tassy / Olivier Pourquie 2007-2024
contact: otassy@igbmc.fr