ENSDARG00000057328


Danio rerio

Features
Gene ID: ENSDARG00000057328
  
Biological name :cth1
  
Synonyms : cth1 / cysteine three histidine 1
  
Possible biological names infered from orthology :
  
Species: Danio rerio
  
Chr. number: 7
Strand: 1
Band:
Gene start: 17947217
Gene end: 17950315
  
Corresponding Affymetrix probe sets: Dr.621.1.S1_at (Zebrafish Array)   NM_130939_at (Zebrafish Genome Array with custom cdf files)   
  
Cross references: Ensembl peptide - ENSDARP00000092374
NCBI entrez gene - 30114     See in Manteia.
RefSeq - NM_130939
RefSeq Peptide - NP_571014
swissprot - Q9PU62
ZFIN ID - ZDB-GENE-990806-20
Ensembl - ENSDARG00000057328
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
No match


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
zfp36l1b / zinc finger protein 36, C3H type-like 1b / Q07352* / P23950* / ZFP36L1* / ZFP36 ring finger protein like 1* / zinc finger protein 36, C3H type-like 1*ENSDARG0000002144324
zfp36l1a / zinc finger protein 36, C3H type-like 1a / Q07352* / P23950* / ZFP36L1* / ZFP36 ring finger protein like 1* / zinc finger protein 36, C3H type-like 1*ENSDARG0000001615424
zfp36l2 / zinc finger protein 36, C3H type-like 2 / P23949* / P47974* / ZFP36 ring finger protein like 2*ENSDARG0000002180623
sb:cb81ENSDARG0000004050322
zgc:162730 / ZFP36* / ZFP36 ring finger protein*ENSDARG0000010372020
zgc:114130ENSDARG0000004072518


Protein motifs (from Interpro)
Interpro ID Name
 IPR000571  Zinc finger, CCCH-type


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0061158 3"-UTR-mediated mRNA destabilization IBA
 cellular_componentGO:0005829 cytosol IBA
 molecular_functionGO:0003730 mRNA 3"-UTR binding IBA
 molecular_functionGO:0046872 metal ion binding IEA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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