ENSDARG00000041295


Danio rerio

Features
Gene ID: ENSDARG00000041295
  
Biological name :lim2.5
  
Synonyms : lens intrinsic membrane protein 2.5 / lim2.5
  
Possible biological names infered from orthology : Lens fiber membrane intrinsic protein / lens intrinsic membrane protein 2 / LIM2 / P55344 / P56563
  
Species: Danio rerio
  
Chr. number: 16
Strand: -1
Band:
Gene start: 50166421
Gene end: 50181206
  
Corresponding Affymetrix probe sets:
  
Cross references: Ensembl peptide - ENSDARP00000124893
Ensembl peptide - ENSDARP00000150246
NCBI entrez gene - 541395     See in Manteia.
RefSeq - XM_005169763
RefSeq Peptide - NP_001013540
swissprot - Q5BKW4
ZFIN ID - ZDB-GENE-050320-94
Ensembl - ENSDARG00000041295
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 LIM2ENSG00000105370Homo sapiens
 Lim2ENSMUSG00000093639Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
lim2.4 / lens intrinsic membrane protein 2.4 / LIM2* / P55344* / P56563* / lens intrinsic membrane protein 2* / Lens fiber membrane intrinsic protein *ENSDARG0000001544588
lim2.1 / lens intrinsic membrane protein 2.1ENSDARG0000006897472
lim2.3 / lens intrinsic membrane protein 2.3ENSDARG0000003740271
lim2.2 / lens intrinsic membrane protein 2.2ENSDARG0000005901542


Protein motifs (from Interpro)
Interpro ID Name
 IPR003935  Lens fibre membrane intrinsic protein
 IPR004031  PMP-22/EMP/MP20/Claudin superfamily
 IPR004032  PMP-22/EMP/MP20


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0008150 biological_process ND
 cellular_componentGO:0016020 membrane IEA
 cellular_componentGO:0016021 integral component of membrane IEA
 molecular_functionGO:0005212 structural constituent of eye lens IEA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

0 s.

 
External programs and data are copyrighted by and are the property of their respective authors.
The Manteia system, data and analyses are provided "as is" with no warranties, expressed or implied as to capabilities or accuracy. User assumes the entire risk as to the results and performance of the software, data and documentation


                   

© Olivier Tassy / Olivier Pourquie 2007-2024
contact: otassy@igbmc.fr