ENSDARG00000041428


Danio rerio

Features
Gene ID: ENSDARG00000041428
  
Biological name :yrdc
  
Synonyms : yrdc / yrdC N(6)-threonylcarbamoyltransferase domain containing
  
Possible biological names infered from orthology : Q3U5F4 / Q86U90 / yrdC domain containing (E.coli)
  
Species: Danio rerio
  
Chr. number: 16
Strand: 1
Band:
Gene start: 4178949
Gene end: 4190726
  
Corresponding Affymetrix probe sets:
  
Cross references: Ensembl peptide - ENSDARP00000146581
Ensembl peptide - ENSDARP00000156493
Ensembl peptide - ENSDARP00000060728
NCBI entrez gene - 797343     See in Manteia.
RefSeq - NM_001083867
RefSeq Peptide - NP_001077336
swissprot - A4IG71
swissprot - F1R994
ZFIN ID - ZDB-GENE-070410-65
Ensembl - ENSDARG00000041428
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 YRDCENSGALG00000029001Gallus gallus
 YRDCENSG00000196449Homo sapiens
 YrdcENSMUSG00000028889Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
No match


Protein motifs (from Interpro)
Interpro ID Name
 IPR006070  YrdC-like domain
 IPR017945  DHBP synthase RibB-like alpha/beta domain superfamily


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0002949 tRNA threonylcarbamoyladenosine modification IBA
 biological_processGO:0006450 regulation of translational fidelity IBA
 cellular_componentGO:0005737 cytoplasm IBA
 molecular_functionGO:0000049 tRNA binding IBA
 molecular_functionGO:0003725 double-stranded RNA binding IEA
 molecular_functionGO:0016779 nucleotidyltransferase activity IBA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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