ENSDARG00000041853


Danio rerio

Features
Gene ID: ENSDARG00000041853
  
Biological name :rbm39b
  
Synonyms : rbm39b / RNA binding motif protein 39b
  
Possible biological names infered from orthology :
  
Species: Danio rerio
  
Chr. number: 8
Strand: -1
Band:
Gene start: 37228611
Gene end: 37249991
  
Corresponding Affymetrix probe sets: Dr.8743.1.S1_at (Zebrafish Array)   Dr.8743.2.S1_at (Zebrafish Array)   NM_001014370_at (Zebrafish Genome Array with custom cdf files)   
  
Cross references: Ensembl peptide - ENSDARP00000116573
Ensembl peptide - ENSDARP00000144751
Ensembl peptide - ENSDARP00000144596
Ensembl peptide - ENSDARP00000061327
Ensembl peptide - ENSDARP00000089405
NCBI entrez gene - 541556     See in Manteia.
RefSeq - NM_001014370
RefSeq Peptide - NP_001014392
swissprot - B0UYR3
swissprot - B0UYR1
swissprot - Q58ER0
ZFIN ID - ZDB-GENE-050327-97
Ensembl - ENSDARG00000041853
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
No match


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
rbm39a / RNA binding motif protein 39a / RBM39* / Q8VH51* / Q14498* / RNA binding motif protein 39*ENSDARG0000001161376


Protein motifs (from Interpro)
Interpro ID Name
 IPR000504  RNA recognition motif domain
 IPR006509  Splicing factor, RBM39-like
 IPR029123  Splicing factor RBM39, linker


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0006397 mRNA processing IEA
 cellular_componentGO:0005634 nucleus IEA
 molecular_functionGO:0003676 nucleic acid binding IEA
 molecular_functionGO:0003723 RNA binding IEA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

0 s.

 
External programs and data are copyrighted by and are the property of their respective authors.
The Manteia system, data and analyses are provided "as is" with no warranties, expressed or implied as to capabilities or accuracy. User assumes the entire risk as to the results and performance of the software, data and documentation


                   

© Olivier Tassy / Olivier Pourquie 2007-2024
contact: otassy@igbmc.fr