ENSDARG00000011613


Danio rerio

Features
Gene ID: ENSDARG00000011613
  
Biological name :rbm39a
  
Synonyms : rbm39a / RNA binding motif protein 39a
  
Possible biological names infered from orthology : Q14498 / Q8VH51 / RBM39 / RNA binding motif protein 39
  
Species: Danio rerio
  
Chr. number: 11
Strand: 1
Band:
Gene start: 24339362
Gene end: 24348715
  
Corresponding Affymetrix probe sets: Dr.1040.1.S1_at (Zebrafish Array)   NM_001012304_at (Zebrafish Genome Array with custom cdf files)   
  
Cross references: Ensembl peptide - ENSDARP00000116290
Ensembl peptide - ENSDARP00000150420
Ensembl peptide - ENSDARP00000149958
Ensembl peptide - ENSDARP00000123547
Ensembl peptide - ENSDARP00000022349
Ensembl peptide - ENSDARP00000113124
Ensembl peptide - ENSDARP00000115129
NCBI entrez gene - 406251     See in Manteia.
RefSeq - NM_001012304
RefSeq - XM_005169275
RefSeq - XM_009306024
RefSeq Peptide - NP_001012304
swissprot - E9QHD4
swissprot - E9QGY4
swissprot - E9QBR2
swissprot - Q803H1
ZFIN ID - ZDB-GENE-040426-2852
Ensembl - ENSDARG00000011613
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 RBM39ENSGALG00000001550Gallus gallus
 RBM39ENSG00000131051Homo sapiens
 Rbm39ENSMUSG00000027620Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
rbm39b / RNA binding motif protein 39bENSDARG0000004185378


Protein motifs (from Interpro)
Interpro ID Name
 IPR000504  RNA recognition motif domain
 IPR006509  Splicing factor, RBM39-like
 IPR029123  Splicing factor RBM39, linker


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0006397 mRNA processing IEA
 cellular_componentGO:0005634 nucleus IEA
 molecular_functionGO:0003676 nucleic acid binding IEA
 molecular_functionGO:0003723 RNA binding IEA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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