ENSGALG00000001550


Gallus gallus

Features
Gene ID: ENSGALG00000001550
  
Biological name :RBM39
  
Synonyms : RBM39 / RNA binding motif protein 39
  
Possible biological names infered from orthology : Q14498 / Q8VH51
  
Species: Gallus gallus
  
Chr. number: 20
Strand: 1
Band:
Gene start: 1032943
Gene end: 1061646
  
Corresponding Affymetrix probe sets: Gga.6112.1.S1_at (Chicken Array)   
  
Cross references: Ensembl peptide - ENSGALP00000002352
NCBI entrez gene - 428133     See in Manteia.
RefSeq - XM_004946908
RefSeq - XM_425690
swissprot - E1BRU3
Ensembl - ENSGALG00000001550
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 rbm39aENSDARG00000011613Danio rerio
 RBM39ENSG00000131051Homo sapiens
 Rbm39ENSMUSG00000027620Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
No match


Protein motifs (from Interpro)
Interpro ID Name
 IPR000504  RNA recognition motif domain
 IPR003954  RNA recognition motif domain, eukaryote
 IPR006509  Splicing factor, RBM39-like
 IPR012677  Nucleotide-binding alpha-beta plait domain superfamily
 IPR029123  Splicing factor RBM39, linker


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0006397 mRNA processing IEA
 cellular_componentGO:0005634 nucleus IEA
 cellular_componentGO:0005654 nucleoplasm IEA
 cellular_componentGO:0005815 microtubule organizing center IEA
 cellular_componentGO:0015630 microtubule cytoskeleton IEA
 cellular_componentGO:0016607 nuclear speck IEA
 cellular_componentGO:0032991 protein-containing complex IEA
 molecular_functionGO:0003676 nucleic acid binding IEA
 molecular_functionGO:0003723 RNA binding IEA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

0 s.

 
External programs and data are copyrighted by and are the property of their respective authors.
The Manteia system, data and analyses are provided "as is" with no warranties, expressed or implied as to capabilities or accuracy. User assumes the entire risk as to the results and performance of the software, data and documentation


                   

© Olivier Tassy / Olivier Pourquie 2007-2024
contact: otassy@igbmc.fr