ENSG00000131051


Homo sapiens

Features
Gene ID: ENSG00000131051
  
Biological name :RBM39
  
Synonyms : Q14498 / RBM39 / RNA binding motif protein 39
  
Possible biological names infered from orthology :
  
Species: Homo sapiens
  
Chr. number: 20
Strand: -1
Band: q11.22
Gene start: 35701347
Gene end: 35742312
  
Corresponding Affymetrix probe sets: 207941_s_at (Human Genome U133 Plus 2.0 Array)   208720_s_at (Human Genome U133 Plus 2.0 Array)   226404_at (Human Genome U133 Plus 2.0 Array)   227223_at (Human Genome U133 Plus 2.0 Array)   
  
Cross references: Ensembl peptide - ENSP00000407466
Ensembl peptide - ENSP00000407150
Ensembl peptide - ENSP00000436747
Ensembl peptide - ENSP00000489196
Ensembl peptide - ENSP00000489005
Ensembl peptide - ENSP00000483837
Ensembl peptide - ENSP00000253363
Ensembl peptide - ENSP00000344581
Ensembl peptide - ENSP00000354437
Ensembl peptide - ENSP00000363150
Ensembl peptide - ENSP00000380527
Ensembl peptide - ENSP00000385977
Ensembl peptide - ENSP00000389459
Ensembl peptide - ENSP00000390303
Ensembl peptide - ENSP00000393493
Ensembl peptide - ENSP00000394602
Ensembl peptide - ENSP00000394824
Ensembl peptide - ENSP00000395124
Ensembl peptide - ENSP00000395563
Ensembl peptide - ENSP00000397443
Ensembl peptide - ENSP00000397917
Ensembl peptide - ENSP00000405916
Ensembl peptide - ENSP00000406900
NCBI entrez gene - 9584     See in Manteia.
OMIM - 604739
RefSeq - XM_017028147
RefSeq - NM_001242599
RefSeq - NM_001242600
RefSeq - NM_001323422
RefSeq - NM_001323423
RefSeq - NM_001323424
RefSeq - NM_004902
RefSeq - NM_184234
RefSeq - XM_006723890
RefSeq - XM_006723891
RefSeq - XM_011529111
RefSeq - XM_017028138
RefSeq - XM_017028139
RefSeq - XM_017028140
RefSeq - XM_017028141
RefSeq - XM_017028142
RefSeq - XM_017028143
RefSeq - XM_017028144
RefSeq - XM_017028145
RefSeq - XM_017028146
RefSeq Peptide - NP_001229529
RefSeq Peptide - NP_001310351
RefSeq Peptide - NP_001310352
RefSeq Peptide - NP_001310353
RefSeq Peptide - NP_004893
RefSeq Peptide - NP_909122
RefSeq Peptide - NP_001229528
swissprot - F2Z3E6
swissprot - F8WF24
swissprot - F8WF73
swissprot - G3XAC6
swissprot - H0Y4X3
swissprot - H0Y6I9
swissprot - H7BZG3
swissprot - Q5QP22
swissprot - Q5QP23
swissprot - A0A087X122
swissprot - Q14498
swissprot - A8MYG5
swissprot - A0A0U1RQW2
swissprot - A0A0U1RQH7
swissprot - F2Z2Z5
Ensembl - ENSG00000131051
  
See expression report in BioGPS
See gene description in Wikigenes
See gene description in GeneCards
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 rbm39aENSDARG00000011613Danio rerio
 RBM39ENSGALG00000001550Gallus gallus
 Rbm39ENSMUSG00000027620Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
RBM23 / Q86U06 / RNA binding motif protein 23ENSG0000010046150


Protein motifs (from Interpro)
Interpro ID Name
 IPR000504  RNA recognition motif domain
 IPR003954  RNA recognition motif domain, eukaryote
 IPR006509  Splicing factor, RBM39-like
 IPR029123  Splicing factor RBM39, linker
 IPR035979  RNA-binding domain superfamily


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0006351 transcription, DNA-templated IEA
 biological_processGO:0006355 regulation of transcription, DNA-templated IEA
 biological_processGO:0006396 RNA processing TAS
 biological_processGO:0006397 mRNA processing IEA
 biological_processGO:0008380 RNA splicing IEA
 cellular_componentGO:0005634 nucleus IEA
 cellular_componentGO:0005654 nucleoplasm TAS
 cellular_componentGO:0005815 microtubule organizing center IDA
 cellular_componentGO:0015630 microtubule cytoskeleton IDA
 cellular_componentGO:0016607 nuclear speck IDA
 cellular_componentGO:0032991 protein-containing complex IMP
 molecular_functionGO:0003676 nucleic acid binding IEA
 molecular_functionGO:0003723 RNA binding IEA
 molecular_functionGO:0005515 protein binding IPI


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

0 s.

 
External programs and data are copyrighted by and are the property of their respective authors.
The Manteia system, data and analyses are provided "as is" with no warranties, expressed or implied as to capabilities or accuracy. User assumes the entire risk as to the results and performance of the software, data and documentation


                   

© Olivier Tassy / Olivier Pourquie 2007-2024
contact: otassy@igbmc.fr