ENSMUSG00000027620


Mus musculus

Features
Gene ID: ENSMUSG00000027620
  
Biological name :Rbm39
  
Synonyms : Q8VH51 / Rbm39 / RNA binding motif protein 39
  
Possible biological names infered from orthology : Q14498
  
Species: Mus musculus
  
Chr. number: 2
Strand: -1
Band: H1
Gene start: 156147239
Gene end: 156180238
  
Corresponding Affymetrix probe sets: 10489018 (MoGene1.0st)   1420982_at (Mouse Genome 430 2.0 Array)   1426671_a_at (Mouse Genome 430 2.0 Array)   1438397_a_at (Mouse Genome 430 2.0 Array)   1438398_at (Mouse Genome 430 2.0 Array)   1438420_at (Mouse Genome 430 2.0 Array)   1439316_at (Mouse Genome 430 2.0 Array)   1442744_at (Mouse Genome 430 2.0 Array)   1442745_x_at (Mouse Genome 430 2.0 Array)   1443988_at (Mouse Genome 430 2.0 Array)   1446147_at (Mouse Genome 430 2.0 Array)   1446148_x_at (Mouse Genome 430 2.0 Array)   
  
Cross references: Ensembl peptide - ENSMUSP00000117462
Ensembl peptide - ENSMUSP00000116950
Ensembl peptide - ENSMUSP00000119054
Ensembl peptide - ENSMUSP00000124018
Ensembl peptide - ENSMUSP00000121603
Ensembl peptide - ENSMUSP00000120597
Ensembl peptide - ENSMUSP00000119541
Ensembl peptide - ENSMUSP00000119298
Ensembl peptide - ENSMUSP00000119204
Ensembl peptide - ENSMUSP00000029149
Ensembl peptide - ENSMUSP00000105213
Ensembl peptide - ENSMUSP00000105216
Ensembl peptide - ENSMUSP00000114824
Ensembl peptide - ENSMUSP00000115488
Ensembl peptide - ENSMUSP00000116820
NCBI entrez gene - 170791     See in Manteia.
MGI - MGI:2157953
RefSeq - XM_017316008
RefSeq - XM_011239324
RefSeq - XM_011239325
RefSeq - XM_011239326
RefSeq - XM_011239327
RefSeq - XM_017315966
RefSeq - XM_017315976
RefSeq - XM_017315978
RefSeq - XM_017315987
RefSeq - XM_017315989
RefSeq - XM_017315991
RefSeq - XM_017315992
RefSeq - XM_017315994
RefSeq - XM_017315998
RefSeq - XM_017316005
RefSeq - NM_001291114
RefSeq - NM_001291115
RefSeq - NM_133242
RefSeq - XM_006498832
RefSeq - XM_006498844
RefSeq - XM_006498846
RefSeq - XM_006498847
RefSeq - XM_006498848
RefSeq - XM_006498849
RefSeq - XM_011239322
RefSeq - XM_011239323
RefSeq Peptide - NP_001278043
RefSeq Peptide - NP_001278044
RefSeq Peptide - NP_573505
swissprot - D6RJ85
swissprot - D6RCZ8
swissprot - B7ZD64
swissprot - F7AA45
swissprot - E9Q999
swissprot - Q3U313
swissprot - Q8VH51
swissprot - B7ZD61
swissprot - B7ZD63
swissprot - E9Q8F0
swissprot - E9PZF9
Ensembl - ENSMUSG00000027620
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 rbm39aENSDARG00000011613Danio rerio
 RBM39ENSGALG00000001550Gallus gallus
 RBM39ENSG00000131051Homo sapiens


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
No match


Protein motifs (from Interpro)
Interpro ID Name
 IPR000504  RNA recognition motif domain
 IPR003954  RNA recognition motif domain, eukaryote
 IPR006509  Splicing factor, RBM39-like
 IPR029123  Splicing factor RBM39, linker
 IPR035979  RNA-binding domain superfamily


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0006351 transcription, DNA-templated TAS
 biological_processGO:0006355 regulation of transcription, DNA-templated IEA
 biological_processGO:0006397 mRNA processing IEA
 biological_processGO:0008380 RNA splicing IEA
 cellular_componentGO:0005634 nucleus IEA
 cellular_componentGO:0005654 nucleoplasm ISO
 cellular_componentGO:0005815 microtubule organizing center ISO
 cellular_componentGO:0015630 microtubule cytoskeleton ISO
 cellular_componentGO:0016607 nuclear speck ISO
 cellular_componentGO:0032991 protein-containing complex IEA
 molecular_functionGO:0003676 nucleic acid binding IEA
 molecular_functionGO:0003713 transcription coactivator activity TAS
 molecular_functionGO:0003723 RNA binding IEA
 molecular_functionGO:0005515 protein binding IPI


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 MP:0011091 complete prenatal lethality "death of all organisms of a given genotype in a population between fertilization and birth (Mus: approximately E18.5)" [MGI:csmith]
Show

Allelic Composition: Bmp4tm1Blh/Bmp4tm3.1Blh,Tg(Tnnt2-cre)5Blh/0
Genetic Background: involves: 129S/Sv * Black Swiss * C57BL/6 * DBA/2 * ICR

  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

0 s.

 
External programs and data are copyrighted by and are the property of their respective authors.
The Manteia system, data and analyses are provided "as is" with no warranties, expressed or implied as to capabilities or accuracy. User assumes the entire risk as to the results and performance of the software, data and documentation


                   

© Olivier Tassy / Olivier Pourquie 2007-2024
contact: otassy@igbmc.fr