ENSDARG00000043453


Danio rerio

Features
Gene ID: ENSDARG00000043453
  
Biological name :rps5
  
Synonyms : ribosomal protein S5 / rps5
  
Possible biological names infered from orthology : P46782
  
Species: Danio rerio
  
Chr. number: 15
Strand: -1
Band:
Gene start: 39964943
Gene end: 39971756
  
Corresponding Affymetrix probe sets: Dr.1324.1.S1_at (Zebrafish Array)   NM_173232_at (Zebrafish Genome Array with custom cdf files)   
  
Cross references: Ensembl peptide - ENSDARP00000063788
Ensembl peptide - ENSDARP00000123493
NCBI entrez gene - 192297     See in Manteia.
RefSeq - XM_021481330
RefSeq - NM_173232
RefSeq Peptide - NP_775339
swissprot - Q6PC80
ZFIN ID - ZDB-GENE-020419-12
Ensembl - ENSDARG00000043453
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 RPS5ENSG00000083845Homo sapiens
 Rps5ENSMUSG00000012848Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
No match


Protein motifs (from Interpro)
Interpro ID Name
 IPR000235  Ribosomal protein S5/S7
 IPR005716  Ribosomal protein S5/S7, eukaryotic/archaeal
 IPR020606  Ribosomal protein S7, conserved site
 IPR023798  Ribosomal protein S7 domain


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0000028 ribosomal small subunit assembly IBA
 biological_processGO:0006412 translation IBA
 cellular_componentGO:0005840 ribosome IEA
 cellular_componentGO:0015935 small ribosomal subunit IEA
 cellular_componentGO:0022627 cytosolic small ribosomal subunit IBA
 molecular_functionGO:0003723 RNA binding IEA
 molecular_functionGO:0003729 mRNA binding IBA
 molecular_functionGO:0003735 structural constituent of ribosome IBA
 molecular_functionGO:0019843 rRNA binding IBA


Pathways (from Reactome)
Pathway description
L13a-mediated translational silencing of Ceruloplasmin expression
SRP-dependent cotranslational protein targeting to membrane
Major pathway of rRNA processing in the nucleolus and cytosol
Translation initiation complex formation
Formation of a pool of free 40S subunits
Formation of the ternary complex, and subsequently, the 43S complex
Ribosomal scanning and start codon recognition
GTP hydrolysis and joining of the 60S ribosomal subunit
Nonsense Mediated Decay (NMD) independent of the Exon Junction Complex (EJC)
Nonsense Mediated Decay (NMD) enhanced by the Exon Junction Complex (EJC)


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 ZFA:0000008 brain brain necrotic , abnormal
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 ZFA:0000012 central nervous system central nervous system necrotic , abnormal
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 ZFA:0000084 yolk yolk circular , abnormal
yolk non-functional , abnormal
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 ZFA:0000106 extension extension decreased thickness , abnormal
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 ZFA:0000107 eye eye decreased size , abnormal
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 ZFA:0000110 fourth ventricle fourth ventricle distended , abnormal
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 ZFA:0000112 gut gut hypoplastic , abnormal
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 ZFA:0000123 liver liver hypoplastic , abnormal
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 ZFA:0000142 peripheral nervous system peripheral nervous system chromosome amount , abnormal
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 ZFA:0001114 head head decreased size , abnormal
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 ZFA:0001115 trunk trunk decreased thickness , abnormal
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Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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