ENSDARG00000043732


Danio rerio

Features
Gene ID: ENSDARG00000043732
  
Biological name :cops4
  
Synonyms : COP9 constitutive photomorphogenic homolog subunit 4 (Arabidopsis) / cops4 / Q6P0H6
  
Possible biological names infered from orthology : COP9 signalosome complex subunit 4 / COP9 signalosome subunit 4 / O88544 / Q9BT78
  
Species: Danio rerio
  
Chr. number: 10
Strand: 1
Band:
Gene start: 11355841
Gene end: 11372541
  
Corresponding Affymetrix probe sets: Dr.16691.1.S1_at (Zebrafish Array)   Dr.25135.1.A1_x_at (Zebrafish Array)   Dr.3343.1.A1_x_at (Zebrafish Array)   
  
Cross references: Ensembl peptide - ENSDARP00000064214
Ensembl peptide - ENSDARP00000153791
NCBI entrez gene - 325592     See in Manteia.
swissprot - Q6P0H6
ZFIN ID - ZDB-GENE-030131-4317
Ensembl - ENSDARG00000043732
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 COPS4ENSGALG00000011130Gallus gallus
 COPS4ENSG00000138663Homo sapiens
 Cops4ENSMUSG00000035297Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
No match


Protein motifs (from Interpro)
Interpro ID Name
 IPR000717  Proteasome component (PCI) domain
 IPR011990  Tetratricopeptide-like helical domain superfamily
 IPR011991  ArsR-like helix-turn-helix domain


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0000338 protein deneddylation IBA
 cellular_componentGO:0005634 nucleus IEA
 cellular_componentGO:0005737 cytoplasm IEA
 cellular_componentGO:0005829 cytosol IBA
 cellular_componentGO:0008021 synaptic vesicle IEA
 cellular_componentGO:0008180 COP9 signalosome IBA
 cellular_componentGO:0030054 cell junction IEA
 cellular_componentGO:0031410 cytoplasmic vesicle IEA
 cellular_componentGO:0045202 synapse IEA
 molecular_functionGO:0019784 NEDD8-specific protease activity IBA


Pathways (from Reactome)
Pathway description
DNA Damage Recognition in GG-NER
Formation of TC-NER Pre-Incision Complex
Cargo recognition for clathrin-mediated endocytosis
Neddylation


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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